Download MendeleyCrystal structure of human cathepsin S produced in insect cells in complex with ketoamide 13b
Falke, S., Karnicar, K., Usenik, A., Lindic, N., Sekirnik, A., Reinke, P.Y.A., Guenther, S., Turk, D., Meents, A.To be published.
9GJ2
Crystal structure of human cathepsin S produced in insect cells in complex with ketoamide 13b
- PDB DOI: https://doi.org/10.2210/pdb9GJ2/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2024-08-20 Released: 2024-09-04
- Funding Organization(s): Helmholtz Association, German Federal Ministry for Education and Research, Slovenian Research Agency
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.162
- R-Value Work: 0.151
- R-Value Observed: 0.151
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cathepsin S | 242 | Homo sapiens | Mutation(s): 0 Gene Names: CTSS EC: 3.4.22.27 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25774 (Homo sapiens) Explore P25774 Go to UniProtKB: P25774 | |||||
PHAROS: P25774 GTEx: ENSG00000163131 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P25774 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| KH0 (Subject of Investigation/LOI) Query on KH0 | C [auth A], H [auth B] | ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate C31 H41 N5 O7 FRACPXUHUTXLCX-LFBFJMOVSA-N |  | ||
| CIT Query on CIT | J [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| DMS Query on DMS | F [auth A], G [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A], E [auth A], I [auth B], K [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.162
- R-Value Work: 0.151
- R-Value Observed: 0.151
- Space Group: P 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.102 | α = 90 |
| b = 86.102 | β = 90 |
| c = 152.045 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-09-04 Deposition Author(s): Falke, S., Karnicar, K., Usenik, A., Lindic, N., Sekirnik, A., Reinke, P.Y.A., Guenther, S., Turk, D., Meents, A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Helmholtz Association | Germany | FISCOV |
| Helmholtz Association | Germany | SFragX |
| German Federal Ministry for Education and Research | Germany | 031B0405 |
| Slovenian Research Agency | Slovenia | P1-0048 |
| Slovenian Research Agency | Slovenia | IO-0048 |
Revision History (Full details and data files)
- Version 1.0: 2024-09-04
Type: Initial release
