9F1B

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

NAC guides a ribosomal multienzyme complex for nascent protein processing.

Lentzsch, A.M.Yudin, D.Gamerdinger, M.Chandrasekar, S.Rabl, L.Scaiola, A.Deuerling, E.Ban, N.Shan, S.O.

(2024) Nature 

  • DOI: https://doi.org/10.1038/s41586-024-07846-7
  • Primary Citation of Related Structures:  
    9F1B, 9F1C, 9F1D

  • PubMed Abstract: 

    Approximately 40% of the mammalian proteome undergoes N-terminal methionine excision and acetylation, mediated sequentially by methionine aminopeptidase (MetAP) and N-acetyltransferase A (NatA), respectively 1 . Both modifications are strictly cotranslational and essential in higher eukaryotic organisms 1 . The interaction, activity and regulation of these enzymes on translating ribosomes are poorly understood. Here we perform biochemical, structural and in vivo studies to demonstrate that the nascent polypeptide-associated complex 2,3 (NAC) orchestrates the action of these enzymes. NAC assembles a multienzyme complex with MetAP1 and NatA early during translation and pre-positions the active sites of both enzymes for timely sequential processing of the nascent protein. NAC further releases the inhibitory interactions from the NatA regulatory protein huntingtin yeast two-hybrid protein K 4,5 (HYPK) to activate NatA on the ribosome, enforcing cotranslational N-terminal acetylation. Our results provide a mechanistic model for the cotranslational processing of proteins in eukaryotic cells.


  • Organizational Affiliation

    Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL22A [auth BP]184Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein eS17B [auth Aq]135Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TU13 (Oryctolagus cuniculus)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL42C [auth Bo]106Oryctolagus cuniculusMutation(s): 0 
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Find proteins for A0AAA9WX15 (Oryctolagus cuniculus)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS13E [auth Ar]151Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor BTF3F [auth Cu]162Homo sapiensMutation(s): 0 
Gene Names: BTF3NACBOK/SW-cl.8
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PHAROS:  P20290
GTEx:  ENSG00000145741 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL13G [auth BL]211Oryctolagus cuniculusMutation(s): 2 
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Find proteins for G1TKB3 (Oryctolagus cuniculus)
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_L23eN domain-containing proteinH [auth BX]156Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SE76 (Oryctolagus cuniculus)
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aI [auth Bp]92Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SY53 (Oryctolagus cuniculus)
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL18J [auth BQ]188Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19K [auth As]145Oryctolagus cuniculusMutation(s): 2 
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Find proteins for G1TN62 (Oryctolagus cuniculus)
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL28L [auth Br]136Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1U7L1 (Oryctolagus cuniculus)
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L19M [auth BR]196Oryctolagus cuniculusMutation(s): 3 
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Find proteins for G1TJR3 (Oryctolagus cuniculus)
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS10N [auth At]119Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
60S acidic ribosomal protein P0O [auth Bs]318Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aP [auth BG]266Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22Q [auth BU]128Oryctolagus cuniculusMutation(s): 5 
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Find proteins for G1TSG1 (Oryctolagus cuniculus)
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S15aR [auth Av]130Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TG89 (Oryctolagus cuniculus)
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
N-alpha-acetyltransferase 15, NatA auxiliary subunitS [auth DB]915Homo sapiensMutation(s): 0 
Gene Names: NAA15GA19NARG1NATHTBDN100
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GTEx:  ENSG00000164134 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent polypeptide-associated complex subunit alphaT [auth Ct]238Homo sapiensMutation(s): 0 
Gene Names: NACAHSD48
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GTEx:  ENSG00000196531 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9U [auth BH]192Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SWI6 (Oryctolagus cuniculus)
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L23V [auth BV]140Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1T6D1 (Oryctolagus cuniculus)
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23W [auth Aw]143Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SZ47 (Oryctolagus cuniculus)
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L21Y [auth BT]160Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10Z [auth BI]214Oryctolagus cuniculusMutation(s): 0 
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Find proteins for B7NZQ2 (Oryctolagus cuniculus)
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L24AA [auth BW]157Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SE28 (Oryctolagus cuniculus)
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24BA [auth Ax]130Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS21DA [auth Au]83Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11EA [auth BJ]178Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2FA [auth AZ]294Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25GA [auth Ay]124Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent chainIA [auth BK]29Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aJA [auth Aa]264Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41KA [auth Az]25Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2LA [auth BA]257Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L12MA [auth Bt]165Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14NA [auth BM]218Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2OA [auth Ab]293Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L26PA [auth BY]145Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L3QA [auth BB]403Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL20RA [auth BS]176Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3SA [auth Ac]281Oryctolagus cuniculusMutation(s): 0 
EC: 4.2.99.18
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27TA [auth BZ]136Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL4UA [auth BC]412Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15VA [auth BN]204Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1T0C1 (Oryctolagus cuniculus)
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4WA [auth Ad]263Oryctolagus cuniculusMutation(s): 4 
UniProt
Find proteins for G1TK17 (Oryctolagus cuniculus)
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UniProt GroupG1TK17
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27aXA [auth Ba]148Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL18YA [auth B]297Oryctolagus cuniculusMutation(s): 2 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13ZA [auth BO]203Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S5AB [auth Ae]204Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29BB [auth Bb]245Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6CB [auth BE]291Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase class-mu 26 kDa isozyme,N-alpha-acetyltransferase 50DB [auth DA]403Schistosoma japonicumHomo sapiens
This entity is chimeric
Mutation(s): 0 
EC: 2.5.1.18 (PDB Primary Data), 2.3.1.258 (PDB Primary Data), 2.3.1 (PDB Primary Data)
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PHAROS:  Q9GZZ1
GTEx:  ENSG00000121579 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6EB [auth Af]249Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30FB [auth Bc]115Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal Protein uL30GB [auth BF]247Oryctolagus cuniculusMutation(s): 4 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
N-alpha-acetyltransferase 10HB [auth DC]235Homo sapiensMutation(s): 2 
Gene Names: NAA10ARD1ARD1ATE2
EC: 2.3.1.255
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PHAROS:  P41227
GTEx:  ENSG00000102030 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7IB [auth Ag]432Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L31JB [auth Bd]125Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8LB [auth Ah]208Oryctolagus cuniculusMutation(s): 1 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L32MB [auth Be]135Oryctolagus cuniculusMutation(s): 2 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27NB [auth AA]84Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S9OB [auth Ai]194Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35aPB [auth Bf]110Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28QB [auth AB]69Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
S10_plectin domain-containing proteinRB [auth Aj]165Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL34SB [auth Bg]115Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S27aTB [auth AC]156Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11UB [auth Ak]158Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35VB [auth Bh]123Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30WB [auth AD]133Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12XB [auth Al]132Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36YB [auth Bi]105Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS26ZB [auth AE]115Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13AC [auth Am]151Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37BC [auth Bj]97Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein RACK1CC [auth AF]317Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS11DC [auth An]151Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38EC [auth Bk]70Oryctolagus cuniculusMutation(s): 1 
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S29FC [auth AG]56Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein uS19GC [auth Ao]145Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 86
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39-likeHC [auth Bl]51Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 88
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS9JC [auth Ap]172Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 89
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-ribosomal protein eL40 fusion proteinKC [auth Bm]128Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 4
MoleculeChains LengthOrganismImage
P-site tRNAD [auth AT]76Oryctolagus cuniculus
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Entity ID: 24
MoleculeChains LengthOrganismImage
28S rRNAX [auth B5]4,808Oryctolagus cuniculus
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Entity ID: 29
MoleculeChains LengthOrganismImage
5S rRNACA [auth B7]119Oryctolagus cuniculus
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Entity ID: 34
MoleculeChains LengthOrganismImage
5.8S rRNAHA [auth B8]158Oryctolagus cuniculus
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Entity ID: 63
MoleculeChains LengthOrganismImage
18S rRNAKB [auth A2]1,870Oryctolagus cuniculus
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Entity ID: 87
MoleculeChains LengthOrganismImage
mRNAIC [auth AH]3Oryctolagus cuniculus
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Small Molecules
Ligands 7 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
IHP
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ZC [auth DB]INOSITOL HEXAKISPHOSPHATE
C6 H18 O24 P6
IMQLKJBTEOYOSI-GPIVLXJGSA-N
GTP
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PX [auth B7]GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
SPM
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HCA [auth A2],
HJ [auth B5],
QH [auth B5]
SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
SPD
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BR [auth B5]
CK [auth B5]
DBA [auth A2]
DU [auth B5]
EF [auth B5]
BR [auth B5],
CK [auth B5],
DBA [auth A2],
DU [auth B5],
EF [auth B5],
HN [auth B5],
IAA [auth A2],
IQ [auth B5],
IT [auth B5],
JE [auth B5],
KBA [auth A2],
MM [auth B5],
NI [auth B5],
NW [auth B5],
OD [auth B5],
OP [auth B5],
OS [auth B5],
PAA [auth A2],
RBA [auth A2],
RL [auth B5],
TV [auth B5],
VE [auth B5],
VG [auth B5],
VO [auth B5],
WAA [auth A2],
XK [auth B5],
XU [auth B5],
YBA [auth A2],
ZBA [auth A2],
ZF [auth B5]
SPERMIDINE
C7 H19 N3
ATHGHQPFGPMSJY-UHFFFAOYSA-N
ZN
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MC [auth Bo]
OFA [auth Bg]
PFA [auth AC]
RFA [auth AE]
SFA [auth Bj]
MC [auth Bo],
OFA [auth Bg],
PFA [auth AC],
RFA [auth AE],
SFA [auth Bj],
VC [auth Bp],
XFA [auth AG],
ZFA [auth Bm]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
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AAA [auth A2]
ACA [auth A2]
AD [auth Ct]
ADA [auth A2]
AE [auth B5]
AAA [auth A2],
ACA [auth A2],
AD [auth Ct],
ADA [auth A2],
AE [auth B5],
AG [auth B5],
AH [auth B5],
AI [auth B5],
AL [auth B5],
AM [auth B5],
AP [auth B5],
AS [auth B5],
AT [auth B5],
AV [auth B5],
AW [auth B5],
AZ [auth A2],
BAA [auth A2],
BCA [auth A2],
BDA [auth A2],
BEA [auth A2],
BG [auth B5],
BH [auth B5],
BI [auth B5],
BL [auth B5],
BP [auth B5],
BS [auth B5],
BV [auth B5],
BW [auth B5],
BY [auth B8],
BZ [auth A2],
CAA [auth A2],
CBA [auth A2],
CCA [auth A2],
CD [auth BV],
CDA [auth A2],
CEA [auth A2],
CG [auth B5],
CH [auth B5],
CI [auth B5],
CL [auth B5],
CM [auth B5],
CO [auth B5],
CP [auth B5],
CR [auth B5],
CS [auth B5],
CV [auth B5],
CW [auth B5],
CY [auth B8],
CZ [auth A2],
DAA [auth A2],
DDA [auth A2],
DEA [auth A2],
DFA [auth A2],
DG [auth B5],
DH [auth B5],
DI [auth B5],
DK [auth B5],
DL [auth B5],
DM [auth B5],
DO [auth B5],
DP [auth B5],
DR [auth B5],
DS [auth B5],
DW [auth B5],
DY [auth B8],
EAA [auth A2],
EBA [auth A2],
ECA [auth A2],
ED [auth B5],
EEA [auth A2],
EFA [auth A2],
EG [auth B5],
EH [auth B5],
EI [auth B5],
EK [auth B5],
EL [auth B5],
EO [auth B5],
EP [auth B5],
ER [auth B5],
ES [auth B5],
EU [auth B5],
EW [auth B5],
FBA [auth A2],
FCA [auth A2],
FD [auth B5],
FDA [auth A2],
FF [auth B5],
FFA [auth A2],
FG [auth B5],
FH [auth B5],
FK [auth B5],
FL [auth B5],
FO [auth B5],
FP [auth B5],
FR [auth B5],
FS [auth B5],
FU [auth B5],
FV [auth B5],
FY [auth B8],
FZ [auth A2],
GBA [auth A2],
GCA [auth A2],
GD [auth B5],
GF [auth B5],
GFA [auth A2],
GG [auth B5],
GH [auth B5],
GK [auth B5],
GL [auth B5],
GO [auth B5],
GP [auth B5],
GR [auth B5],
GS [auth B5],
GU [auth B5],
GV [auth B5],
GX [auth B7],
GZ [auth A2],
HAA [auth A2],
HDA [auth A2],
HF [auth B5],
HG [auth B5],
HH [auth B5],
HK [auth B5],
HL [auth B5],
HO [auth B5],
HR [auth B5],
HU [auth B5],
HV [auth B5],
HX [auth B7],
HZ [auth A2],
ICA [auth A2],
IDA [auth A2],
IEA [auth A2],
IF [auth B5],
IG [auth B5],
IJ [auth B5],
IK [auth B5],
IL [auth B5],
IN [auth B5],
IO [auth B5],
IR [auth B5],
IU [auth B5],
IV [auth B5],
IX [auth B7],
IZ [auth A2],
JAA [auth A2],
JBA [auth A2],
JCA [auth A2],
JDA [auth A2],
JEA [auth A2],
JF [auth B5],
JFA [auth A2],
JG [auth B5],
JJ [auth B5],
JK [auth B5],
JN [auth B5],
JO [auth B5],
JQ [auth B5],
JR [auth B5],
JT [auth B5],
JU [auth B5],
JV [auth B5],
JX [auth B7],
JZ [auth A2],
KAA [auth A2],
KCA [auth A2],
KE [auth B5],
KEA [auth A2],
KF [auth B5],
KG [auth B5],
KJ [auth B5],
KK [auth B5],
KN [auth B5],
KO [auth B5],
KQ [auth B5],
KR [auth B5],
KT [auth B5],
KX [auth B7],
LAA [auth A2],
LBA [auth A2],
LC [auth BP],
LE [auth B5],
LEA [auth A2],
LF [auth B5],
LG [auth B5],
LJ [auth B5],
LK [auth B5],
LN [auth B5],
LO [auth B5],
LQ [auth B5],
LR [auth B5],
LT [auth B5],
LU [auth B5],
LX [auth B7],
MBA [auth A2],
ME [auth B5],
MF [auth B5],
MJ [auth B5],
MK [auth B5],
MN [auth B5],
MO [auth B5],
MQ [auth B5],
MR [auth B5],
MT [auth B5],
MU [auth B5],
MX [auth B7],
MZ [auth A2],
NBA [auth A2],
NCA [auth A2],
NE [auth B5],
NF [auth B5],
NJ [auth B5],
NK [auth B5],
NM [auth B5],
NN [auth B5],
NO [auth B5],
NQ [auth B5],
NT [auth B5],
NX [auth B7],
NY [auth Ba],
NZ [auth A2],
OAA [auth A2],
OC [auth AT],
OCA [auth A2],
ODA [auth A2],
OE [auth B5],
OF [auth B5],
OI [auth B5],
OJ [auth B5],
OK [auth B5],
OM [auth B5],
ON [auth B5],
OQ [auth B5],
OT [auth B5],
OU [auth B5],
OW [auth B5],
OX [auth B7],
OZ [auth A2],
PC [auth AT],
PCA [auth A2],
PD [auth B5],
PDA [auth A2],
PE [auth B5],
PEA [auth A2],
PF [auth B5],
PJ [auth B5],
PM [auth B5],
PN [auth B5],
PP [auth B5],
PQ [auth B5],
PS [auth B5],
PT [auth B5],
PU [auth B5],
PW [auth B5],
PZ [auth A2],
QAA [auth A2],
QBA [auth A2],
QC [auth AT],
QCA [auth A2],
QD [auth B5],
QDA [auth A2],
QE [auth B5],
QEA [auth A2],
QF [auth B5],
QI [auth B5],
QJ [auth B5],
QM [auth B5],
QN [auth B5],
QP [auth B5],
QQ [auth B5],
QS [auth B5],
QT [auth B5],
QW [auth B5],
QX [auth B8],
QZ [auth A2],
RAA [auth A2],
RE [auth B5],
REA [auth A2],
RG [auth B5],
RH [auth B5],
RI [auth B5],
RJ [auth B5],
RM [auth B5],
RN [auth B5],
RP [auth B5],
RQ [auth B5],
RS [auth B5],
RT [auth B5],
RW [auth B5],
RX [auth B8],
RY [auth Af],
SAA [auth A2],
SBA [auth A2],
SD [auth B5],
SE [auth B5],
SEA [auth A2],
SH [auth B5],
SI [auth B5],
SL [auth B5],
SM [auth B5],
SN [auth B5],
SP [auth B5],
SQ [auth B5],
SS [auth B5],
ST [auth B5],
SW [auth B5],
SX [auth B8],
SY [auth A2],
TBA [auth A2],
TCA [auth A2],
TD [auth B5],
TE [auth B5],
TI [auth B5],
TJ [auth B5],
TL [auth B5],
TM [auth B5],
TP [auth B5],
TQ [auth B5],
TS [auth B5],
TT [auth B5],
TW [auth B5],
TX [auth B8],
TY [auth A2],
TZ [auth A2],
UBA [auth A2],
UCA [auth A2],
UD [auth B5],
UE [auth B5],
UFA [auth Bj],
UH [auth B5],
UI [auth B5],
UL [auth B5],
UP [auth B5],
US [auth B5],
UT [auth B5],
UV [auth B5],
UW [auth B5],
UX [auth B8],
UY [auth A2],
UZ [auth A2],
VAA [auth A2],
VCA [auth A2],
VD [auth B5],
VDA [auth A2],
VFA [auth An],
VH [auth B5],
VI [auth B5],
VL [auth B5],
VM [auth B5],
VP [auth B5],
VR [auth B5],
VS [auth B5],
VV [auth B5],
VW [auth B5],
VY [auth A2],
VZ [auth A2],
WCA [auth A2],
WD [auth B5],
WDA [auth A2],
WEA [auth A2],
WG [auth B5],
WH [auth B5],
WI [auth B5],
WL [auth B5],
WM [auth B5],
WO [auth B5],
WP [auth B5],
WR [auth B5],
WS [auth B5],
WV [auth B5],
WZ [auth A2],
XAA [auth A2],
XBA [auth A2],
XCA [auth A2],
XD [auth B5],
XDA [auth A2],
XEA [auth A2],
XG [auth B5],
XH [auth B5],
XI [auth B5],
XL [auth B5],
XM [auth B5],
XO [auth B5],
XP [auth B5],
XR [auth B5],
XS [auth B5],
XV [auth B5],
XZ [auth A2],
YAA [auth A2],
YC [auth BR],
YD [auth B5],
YDA [auth A2],
YEA [auth A2],
YG [auth B5],
YH [auth B5],
YI [auth B5],
YK [auth B5],
YL [auth B5],
YM [auth B5],
YO [auth B5],
YP [auth B5],
YR [auth B5],
YS [auth B5],
YU [auth B5],
YY [auth A2],
ZAA [auth A2],
ZD [auth B5],
ZEA [auth A2],
ZG [auth B5],
ZH [auth B5],
ZK [auth B5],
ZL [auth B5],
ZO [auth B5],
ZP [auth B5],
ZR [auth B5],
ZS [auth B5],
ZU [auth B5],
ZV [auth B5],
ZW [auth BI],
ZY [auth A2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
UNX
Query on UNX

Download Ideal Coordinates CCD File 
ABA [auth A2]
AEA [auth A2]
AF [auth B5]
AFA [auth A2]
AJ [auth B5]
ABA [auth A2],
AEA [auth A2],
AF [auth B5],
AFA [auth A2],
AJ [auth B5],
AK [auth B5],
AN [auth B5],
AO [auth B5],
AQ [auth B5],
AR [auth B5],
AU [auth B5],
AX [auth B7],
AY [auth B8],
BBA [auth A2],
BD [auth BH],
BE [auth B5],
BF [auth B5],
BFA [auth A2],
BJ [auth B5],
BK [auth B5],
BM [auth B5],
BN [auth B5],
BO [auth B5],
BQ [auth B5],
BT [auth B5],
BU [auth B5],
BX [auth B7],
CE [auth B5],
CF [auth B5],
CFA [auth A2],
CJ [auth B5],
CN [auth B5],
CQ [auth B5],
CT [auth B5],
CU [auth B5],
CX [auth B7],
DCA [auth A2],
DD [auth B5],
DE [auth B5],
DF [auth B5],
DJ [auth B5],
DN [auth B5],
DQ [auth B5],
DT [auth B5],
DV [auth B5],
DX [auth B7],
DZ [auth A2],
EDA [auth A2],
EE [auth B5],
EJ [auth B5],
EM [auth B5],
EN [auth B5],
EQ [auth B5],
ET [auth B5],
EV [auth B5],
EX [auth B7],
EY [auth B8],
EZ [auth A2],
FAA [auth A2],
FE [auth B5],
FEA [auth A2],
FI [auth B5],
FJ [auth B5],
FM [auth B5],
FN [auth B5],
FQ [auth B5],
FT [auth B5],
FW [auth B5],
FX [auth B7],
GAA [auth A2],
GDA [auth A2],
GE [auth B5],
GEA [auth A2],
GI [auth B5],
GJ [auth B5],
GM [auth B5],
GN [auth B5],
GQ [auth B5],
GT [auth B5],
GW [auth B5],
GY [auth BA],
HBA [auth A2],
HD [auth B5],
HE [auth B5],
HEA [auth A2],
HFA [auth A2],
HI [auth B5],
HM [auth B5],
HP [auth B5],
HQ [auth B5],
HS [auth B5],
HT [auth B5],
HW [auth B5],
HY [auth BA],
IBA [auth A2],
ID [auth B5],
IE [auth B5],
IFA [auth A2],
IH [auth B5],
II [auth B5],
IM [auth B5],
IP [auth B5],
IS [auth B5],
IW [auth B5],
IY [auth BA],
JD [auth B5],
JH [auth B5],
JI [auth B5],
JL [auth B5],
JM [auth B5],
JP [auth B5],
JS [auth B5],
JW [auth B5],
JY [auth BA],
KD [auth B5],
KDA [auth A2],
KFA [auth Be],
KH [auth B5],
KI [auth B5],
KL [auth B5],
KM [auth B5],
KP [auth B5],
KS [auth B5],
KU [auth B5],
KV [auth B5],
KW [auth B5],
KY [auth BB],
KZ [auth A2],
LCA [auth A2],
LD [auth B5],
LDA [auth A2],
LFA [auth Be],
LH [auth B5],
LI [auth B5],
LL [auth B5],
LM [auth B5],
LP [auth B5],
LS [auth B5],
LV [auth B5],
LW [auth B5],
LY [auth BB],
LZ [auth A2],
MAA [auth A2],
MCA [auth A2],
MD [auth B5],
MDA [auth A2],
MEA [auth A2],
MFA [auth Be],
MG [auth B5],
MH [auth B5],
MI [auth B5],
ML [auth B5],
MP [auth B5],
MS [auth B5],
MV [auth B5],
MW [auth B5],
MY [auth BN],
NAA [auth A2],
NC [auth Bo],
ND [auth B5],
NDA [auth A2],
NEA [auth A2],
NFA [auth Bf],
NG [auth B5],
NH [auth B5],
NL [auth B5],
NP [auth B5],
NR [auth B5],
NS [auth B5],
NU [auth B5],
NV [auth B5],
OBA [auth A2],
OEA [auth A2],
OG [auth B5],
OH [auth B5],
OL [auth B5],
OO [auth B5],
OR [auth B5],
OV [auth B5],
OY [auth Ae],
PBA [auth A2],
PG [auth B5],
PH [auth B5],
PI [auth B5],
PK [auth B5],
PL [auth B5],
PO [auth B5],
PR [auth B5],
PV [auth B5],
PY [auth Bb],
QFA [auth Ak],
QG [auth B5],
QK [auth B5],
QL [auth B5],
QO [auth B5],
QR [auth B5],
QU [auth B5],
QV [auth B5],
QY [auth Bb],
RC [auth AT],
RCA [auth A2],
RD [auth B5],
RDA [auth A2],
RF [auth B5],
RK [auth B5],
RO [auth B5],
RR [auth B5],
RU [auth B5],
RV [auth B5],
RZ [auth A2],
SC [auth AT],
SCA [auth A2],
SDA [auth A2],
SF [auth B5],
SG [auth B5],
SJ [auth B5],
SK [auth B5],
SO [auth B5],
SR [auth B5],
SU [auth B5],
SV [auth B5],
SZ [auth A2],
TAA [auth A2],
TC [auth Ar],
TDA [auth A2],
TEA [auth A2],
TF [auth B5],
TFA [auth Bj],
TG [auth B5],
TH [auth B5],
TK [auth B5],
TN [auth B5],
TO [auth B5],
TR [auth B5],
TU [auth B5],
UAA [auth A2],
UC [auth BL],
UDA [auth A2],
UEA [auth A2],
UF [auth B5],
UG [auth B5],
UJ [auth B5],
UK [auth B5],
UM [auth B5],
UN [auth B5],
UO [auth B5],
UQ [auth B5],
UR [auth B5],
UU [auth B5],
VBA [auth A2],
VEA [auth A2],
VF [auth B5],
VJ [auth B5],
VK [auth B5],
VN [auth B5],
VQ [auth B5],
VT [auth B5],
VU [auth B5],
VX [auth B8],
WBA [auth A2],
WC [auth BQ],
WE [auth B5],
WF [auth B5],
WFA [auth An],
WJ [auth B5],
WK [auth B5],
WN [auth B5],
WQ [auth B5],
WT [auth B5],
WU [auth B5],
WW [auth BT],
WX [auth B8],
WY [auth A2],
XC [auth BQ],
XE [auth B5],
XF [auth B5],
XJ [auth B5],
XN [auth B5],
XQ [auth B5],
XT [auth B5],
XW [auth BT],
XX [auth B8],
XY [auth A2],
YCA [auth A2],
YE [auth B5],
YF [auth B5],
YFA [auth Bl],
YJ [auth B5],
YN [auth B5],
YQ [auth B5],
YT [auth B5],
YV [auth B5],
YW [auth BI],
YX [auth B8],
YZ [auth A2],
ZCA [auth A2],
ZDA [auth A2],
ZE [auth B5],
ZI [auth B5],
ZJ [auth B5],
ZM [auth B5],
ZN [auth B5],
ZQ [auth B5],
ZT [auth B5],
ZX [auth B8],
ZZ [auth A2]
UNKNOWN ATOM OR ION
X
Modified Residues  8 Unique
IDChains TypeFormula2D DiagramParent
MLZ
Query on MLZ
C [auth Bo]L-PEPTIDE LINKINGC7 H16 N2 O2LYS
SAC
Query on SAC
E [auth Ar]L-PEPTIDE LINKINGC5 H9 N O4SER
NMM
Query on NMM
K [auth As]L-PEPTIDE LINKINGC7 H16 N4 O2ARG
HY3
Query on HY3
W [auth Aw]L-PEPTIDE LINKINGC5 H9 N O3PRO
V5N
Query on V5N
LA [auth BA]L-PEPTIDE LINKINGC6 H9 N3 O3HIS
HIC
Query on HIC
QA [auth BB]L-PEPTIDE LINKINGC7 H11 N3 O2HIS
AYA
Query on AYA
UA [auth BC]L-PEPTIDE LINKINGC5 H9 N O3ALA
M3L
Query on M3L
KC [auth Bm]L-PEPTIDE LINKINGC9 H21 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/Office of the DirectorUnited StatesR35 GM136321
German Research Foundation (DFG)GermanySFB969/A01 and A07
Swiss National Science FoundationSwitzerland310030_212308
Swiss National Science FoundationSwitzerland51NF40-205601
European Research Council (ERC)European UnionSynergy Grant 101072047

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-21
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Data collection, Database references
  • Version 2.0: 2024-09-11
    Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary