9EOF

Structure of the human INTS5/8/10/15 subcomplex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of the Integrator complex assembly and association with transcription factors.

Razew, M.Fraudeau, A.Pfleiderer, M.M.Linares, R.Galej, W.P.

(2024) Mol Cell 84: 2542

  • DOI: https://doi.org/10.1016/j.molcel.2024.05.009
  • Primary Citation of Related Structures:  
    9EOC, 9EOF, 9EP1, 9EP4, 9FA4, 9FA7

  • PubMed Abstract: 

    Integrator is a multi-subunit protein complex responsible for premature transcription termination of coding and non-coding RNAs. This is achieved via two enzymatic activities, RNA endonuclease and protein phosphatase, acting on the promoter-proximally paused RNA polymerase Ⅱ (RNAPⅡ). Yet, it remains unclear how Integrator assembly and recruitment are regulated and what the functions of many of its core subunits are. Here, we report the structures of two human Integrator sub-complexes: INTS10/13/14/15 and INTS5/8/10/15, and an integrative model of the fully assembled Integrator bound to the RNAPⅡ paused elongating complex (PEC). An in silico protein-protein interaction screen of over 1,500 human transcription factors (TFs) identified ZNF655 as a direct interacting partner of INTS13 within the fully assembled Integrator. We propose a model wherein INTS13 acts as a platform for the recruitment of TFs that could modulate the stability of the Integrator's association at specific loci and regulate transcription attenuation of the target genes.


  • Organizational Affiliation

    European Molecular Biology Laboratory, EMBL Grenoble, 71 Avenue des Martyrs, 38042 Grenoble, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Integrator complex subunit 15A [auth C]449Homo sapiensMutation(s): 0 
Gene Names: INTS15C7orf26
UniProt & NIH Common Fund Data Resources
Find proteins for Q96N11 (Homo sapiens)
Explore Q96N11 
Go to UniProtKB:  Q96N11
PHAROS:  Q96N11
GTEx:  ENSG00000146576 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96N11
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Integrator complex subunit 10B [auth D]710Homo sapiensMutation(s): 0 
Gene Names: INTS10C8orf35
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NVR2 (Homo sapiens)
Explore Q9NVR2 
Go to UniProtKB:  Q9NVR2
PHAROS:  Q9NVR2
GTEx:  ENSG00000104613 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NVR2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Integrator complex subunit 8C [auth F]995Homo sapiensMutation(s): 0 
Gene Names: INTS8C8orf52
UniProt & NIH Common Fund Data Resources
Find proteins for Q75QN2 (Homo sapiens)
Explore Q75QN2 
Go to UniProtKB:  Q75QN2
PHAROS:  Q75QN2
GTEx:  ENSG00000164941 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ75QN2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Integrator complex subunit 5D [auth G]1,019Homo sapiensMutation(s): 0 
Gene Names: INTS5KIAA1698
UniProt & NIH Common Fund Data Resources
Find proteins for Q6P9B9 (Homo sapiens)
Explore Q6P9B9 
Go to UniProtKB:  Q6P9B9
PHAROS:  Q6P9B9
GTEx:  ENSG00000185085 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6P9B9
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
EIPOD fellowship under Marie Sklodowska-Curie Actions COFUNDGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-12
    Type: Initial release
  • Version 1.1: 2024-07-24
    Changes: Data collection, Database references