Download MendeleyCrystal structure of Catechol 1,2-dioxygenase from Burkholderia multivorans (Iron and 4,5-dichloro-1,2-catechol bound)
Liu, L., Enayati, P., Lovell, S., Buchko, G.W., Battaile, K.P.To be published.
9DRA
Crystal structure of Catechol 1,2-dioxygenase from Burkholderia multivorans (Iron and 4,5-dichloro-1,2-catechol bound)
- PDB DOI: https://doi.org/10.2210/pdb9DRA/pdb
- Classification: HYDROLASE
- Organism(s): Burkholderia multivorans ATCC 17616
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2024-09-25 Released: 2024-10-09
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.183
- R-Value Work: 0.157
- R-Value Observed: 0.158
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Catechol 1,2-dioxygenase | 319 | Burkholderia multivorans ATCC 17616 | Mutation(s): 0 Gene Names: catA EC: 1.13.11.1 |  | |
UniProt | |||||
Find proteins for A0A0H3KXJ8 (Burkholderia multivorans (strain ATCC 17616 / 249)) Explore A0A0H3KXJ8 Go to UniProtKB: A0A0H3KXJ8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3KXJ8 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 12P Query on 12P | E [auth A] | DODECAETHYLENE GLYCOL C24 H50 O13 WRZXKWFJEFFURH-UHFFFAOYSA-N |  | ||
| 2PE Query on 2PE | F [auth A] | NONAETHYLENE GLYCOL C18 H38 O10 YZUUTMGDONTGTN-UHFFFAOYSA-N |  | ||
| A1BA2 (Subject of Investigation/LOI) Query on A1BA2 | D [auth A], K [auth B] | (6R)-3,4-dichloro-6-hydroxycyclohex-3-en-1-one C6 H6 Cl2 O2 UPFPMVWORXIWOQ-RXMQYKEDSA-N |  | ||
| FE (Subject of Investigation/LOI) Query on FE | C [auth A], J [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| CA Query on CA | G [auth A] H [auth A] I [auth A] L [auth B] M [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.183
- R-Value Work: 0.157
- R-Value Observed: 0.158
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M39DRA
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 115.393 | α = 90 |
| b = 52.306 | β = 92.5 |
| c = 120.402 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-10-09 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | 75N93022C00036 |
| National Institutes of Health/Office of the Director | United States | S10OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2024-10-09
Type: Initial release
