Structural basis of RNA-mediated regulation of transcriptional pausing.
Porta, J.C., Ellinger, E., Liu, Y., Chauvier, A., Walter, N.G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit alpha | C [auth G], D [auth H] | 231 | Escherichia coli | Mutation(s): 0  Gene Names: rpoA, pez, phs, sez, b3295, JW3257 EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P0A7Z4 (Escherichia coli (strain K12)) Explore P0A7Z4  Go to UniProtKB:  P0A7Z4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A7Z4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta | E [auth I] | 1,340 | Escherichia coli | Mutation(s): 0  Gene Names: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950 EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P0A8V2 (Escherichia coli (strain K12)) Explore P0A8V2  Go to UniProtKB:  P0A8V2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A8V2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta' | F [auth J] | 1,358 | Escherichia coli | Mutation(s): 0  Gene Names: rpoC, EcE24377A_4529 EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for A7ZUK2 (Escherichia coli O139:H28 (strain E24377A / ETEC)) Explore A7ZUK2  Go to UniProtKB:  A7ZUK2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A7ZUK2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit omega | G [auth K] | 79 | Escherichia coli | Mutation(s): 0  Gene Names: rpoZ, Ecok1_36260, APECO1_2812 EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for A1AHI0 (Escherichia coli O1:K1 / APEC) Explore A1AHI0  Go to UniProtKB:  A1AHI0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1AHI0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (39-MER) | 30 | Escherichia coli | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (30-MER) | 30 | Escherichia coli | |||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 7 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (5'-R(P*AP*GP*UP*AP*UP*CP*AP*CP*UP*AP*CP*UP*GP*GP*UP*AP*GP*GP*AP*GP*U)-3') | H [auth R] | 21 | Escherichia coli | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG (Subject of Investigation/LOI) Query on MG | I [auth J] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
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RECONSTRUCTION | cryoSPARC | 3 |
MODEL REFINEMENT | PHENIX | 1.20_4459: |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35 GM131922 |