9DLL | pdb_00009dll

NMR structures of small molecules bound to a model of an RNA CAG repeat expansion.

  • Classification: RNA
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2024-09-11 Released: 2024-09-25 
  • Deposition Author(s): Chen, J.L., Taghavi, A., Disney, M.D., Fountain, M.A., Childs-Disney, J.L.
  • Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS), Department of Defense (DOD, United States), National Institutes of Health/Office of the Director

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history. 

Literature

NMR structures of small molecules bound to a model of an RNA CAG repeat expansion.

Chen, J.L., Taghavi, A., Disney, M.D., Fountain, M.A.

(2024) Nucleic Acids Res 

Macromolecule Content 

  • Total Structure Weight: 8.63 kDa 
  • Atom Count: 573 
  • Modeled Residue Count: 26 
  • Deposited Residue Count: 26 
  • Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by:  Sequence
Entity ID: 1
MoleculeChains LengthOrganismImage
CAG 13-mer RNA (5'-R(*GP*AP*CP*AP*GP*CP*AP*GP*CP*UP*GP*UP*C)-3')
A, B
13Homo sapiens
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1AZM
(Subject of Investigation/LOI)

Query on A1AZM


Download:Ideal Coordinates CCD File
C [auth B]4-carbamimidamidophenyl 4-carbamimidamidobenzoate
C15 H16 N6 O2
JXJBQAMLLCEHTI-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesR35 NS116846
Department of Defense (DOD, United States)United StatesHT94252310336
National Institutes of Health/Office of the DirectorUnited StatesS10-OD021550

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-25
    Type: Initial release