Crystal Structure of the Substrate Binding Domain Protein of the ABC Transporter PBP2_YxeM from Vibrio cholerae
Kim, Y., Maltseva, N., Grimshaw, S., Joachimiak, A.To be published.
Experimental Data Snapshot
Starting Model: in silico
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Amino acid ABC transporter, periplasmic amino acid-binding portion | 233 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 0  Gene Names: VC_0010 | ||
UniProt | |||||
Find proteins for Q9KVX8 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KVX8  Go to UniProtKB:  Q9KVX8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9KVX8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | AA [auth D], JA [auth G], KA [auth G] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
PGR Query on PGR | T [auth C] | R-1,2-PROPANEDIOL C3 H8 O2 DNIAPMSPPWPWGF-GSVOUGTGSA-N | |||
PGO Query on PGO | IA [auth G] J [auth A] K [auth A] O [auth B] P [auth B] | S-1,2-PROPANEDIOL C3 H8 O2 DNIAPMSPPWPWGF-VKHMYHEASA-N | |||
K Query on K | BA [auth D] DA [auth E] N [auth A] NA [auth G] S [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
CL Query on CL | CA [auth E] EA [auth F] FA [auth F] GA [auth F] HA [auth F] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 118.044 | α = 90 |
b = 105.816 | β = 119.922 |
c = 118.124 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
xia2 | data reduction |
xia2 | data scaling |
HKL-3000 | phasing |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |