9D2C

Crystal Structure of Tungbindin Treated with Proteinase K

PDB DOI: https://doi.org/10.2210/pdb9D2C/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Eubacterium limosum
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-08-08 Released: 2024-09-04
Deposition Author(s): Zhou, D., Chen, L., Rose, J.P., Wang, B.C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.38 Å
R-Value Free: 0.234
R-Value Work: 0.183
R-Value Observed: 0.186

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Tungbindin treated with proteinase K

Zhou, D., Chen, L., Rose, J.P., Wang, B.C.

To be published.

Macromolecule Content

Total Structure Weight: 101.25 kDa
Atom Count: 6,452
Modelled Residue Count: 844
Deposited Residue Count: 936
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Molybdenum-pterin binding domain-containing protein	A B C D E A, B, C, D, E, F, G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], L [auth M]	78	Eubacterium limosum	Mutation(s): 0 Gene Names: C7955_103236, SAMN04515624_10415
UniProt
Find proteins for A0A0U3FVB3 (Eubacterium limosum) Explore A0A0U3FVB3 Go to UniProtKB: A0A0U3FVB3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0U3FVB3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MOO (Subject of Investigation/LOI) Query on MOO Download Ideal Coordinates CCD File SDF format, chain AA [auth L] SDF format, chain BA [auth M] SDF format, chain M [auth A] SDF format, chain N [auth B] SDF format, chain O [auth B] SDF format, chain P [auth C] SDF format, chain Q [auth C] SDF format, chain R [auth D] SDF format, chain S [auth E] SDF format, chain T [auth F] SDF format, chain U [auth H] SDF format, chain V [auth H] SDF format, chain W [auth I] SDF format, chain X [auth I] SDF format, chain Y [auth J] SDF format, chain Z [auth K] MOL2 format, chain AA [auth L] MOL2 format, chain BA [auth M] MOL2 format, chain M [auth A] MOL2 format, chain N [auth B] MOL2 format, chain O [auth B] MOL2 format, chain P [auth C] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth D] MOL2 format, chain S [auth E] MOL2 format, chain T [auth F] MOL2 format, chain U [auth H] MOL2 format, chain V [auth H] MOL2 format, chain W [auth I] MOL2 format, chain X [auth I] MOL2 format, chain Y [auth J] MOL2 format, chain Z [auth K] mmCIF format, chain AA [auth L] mmCIF format, chain BA [auth M] mmCIF format, chain M [auth A] mmCIF format, chain N [auth B] mmCIF format, chain O [auth B] mmCIF format, chain P [auth C] mmCIF format, chain Q [auth C] mmCIF format, chain R [auth D] mmCIF format, chain S [auth E] mmCIF format, chain T [auth F] mmCIF format, chain U [auth H] mmCIF format, chain V [auth H] mmCIF format, chain W [auth I] mmCIF format, chain X [auth I] mmCIF format, chain Y [auth J] mmCIF format, chain Z [auth K]	AA [auth L] BA [auth M] M [auth A] N [auth B] O [auth B] AA [auth L], BA [auth M], M [auth A], N [auth B], O [auth B], P [auth C], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth H], V [auth H], W [auth I], X [auth I], Y [auth J], Z [auth K]	MOLYBDATE ION Mo O₄ MEFBJEMVZONFCJ-UHFFFAOYSA-N		Interactions Focus chain AA [auth L] Focus chain BA [auth M] Focus chain M [auth A] Focus chain N [auth B] Focus chain O [auth B] Focus chain P [auth C] Focus chain Q [auth C] Focus chain R [auth D] Focus chain S [auth E] Focus chain T [auth F] Focus chain U [auth H] Focus chain V [auth H] Focus chain W [auth I] Focus chain X [auth I] Focus chain Y [auth J] Focus chain Z [auth K]