Structural basis for LAG3 interactions with MHC class II
Ming, Q., Tran, T.H., Antfolk, D., Luca, V.C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
H-2 class II histocompatibility antigen, A-B alpha chain | 195 | Mus musculus | Mutation(s): 0  Gene Names: H2-Aa | ||
UniProt | |||||
Find proteins for P14434 (Mus musculus) Explore P14434  Go to UniProtKB:  P14434 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14434 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
H-2 class II histocompatibility antigen, A beta chain | 192 | Mus musculus | Mutation(s): 0  Gene Names: H2-Ab1, H2-iabeta | ||
UniProt | |||||
Find proteins for P14483 (Mus musculus) Explore P14483  Go to UniProtKB:  P14483 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14483 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Class-II-associated invariant chain peptide | C [auth P] | 15 | Homo sapiens | Mutation(s): 0  Gene Names: CD74, DHLAG | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04233 (Homo sapiens) Explore P04233  Go to UniProtKB:  P04233 | |||||
PHAROS:  P04233 GTEx:  ENSG00000019582  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04233 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Secreted lymphocyte activation gene 3 protein | D [auth L] | 210 | Mus musculus | Mutation(s): 0  Gene Names: Lag3 | |
UniProt | |||||
Find proteins for Q61790 (Mus musculus) Explore Q61790  Go to UniProtKB:  Q61790 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q61790 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: Q61790-1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | E [auth A], F [auth B], G [auth L], H [auth L] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 184.994 | α = 90 |
b = 184.994 | β = 90 |
c = 122.672 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data scaling |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Other government | United States | Florida Department of Health Bankhead-Coley 22B07 |
Rita Allen Foundation | United States | -- |