9C49

Cryo-EM structure of Danio rerio voltage-sensing phosphatase (VSP) phosphatase domain

PDB DOI: https://doi.org/10.2210/pdb9C49/pdb
EM Map EMD-45178: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Danio rerio
Expression System: Komagataella pastoris
Mutation(s): Yes

Deposited: 2024-06-03 Released: 2024-07-10
Deposition Author(s): Zhang, L., Brohawn, S.G.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Coupling sensor to enzyme in the voltage sensing phosphatase

Yu, Y., Zhang, L., Li, B., Fu, Z., Brohawn, S.G., Isacoff, E.Y.

To be published.

Macromolecule Content

Total Structure Weight: 119.28 kDa
Atom Count: 4,760
Modelled Residue Count: 586
Deposited Residue Count: 1,040
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase TPTE2	A, B	520	Danio rerio	Mutation(s): 1 Gene Names: tpte, tpip, vsp, wu:fd20e11, wu:fi24b06 EC: 3.1.3.48
UniProt
Find proteins for Q4V9E4 (Danio rerio) Explore Q4V9E4 Go to UniProtKB: Q4V9E4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q4V9E4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-07-10

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM145869

Revision History (Full details and data files)

Version 1.0: 2024-07-10
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.