9C47

TRRAP module of the human TIP60 complex

  • Classification: GENE REGULATION
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2024-06-03 Released: 2024-08-14 
  • Deposition Author(s): Yang, Z., Mameri, A., Florez Ariza, A.J., Cote, J., Nogales, E.
  • Funding Organization(s): Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Canadian Institutes of Health Research (CIHR), Canada Research Chairs

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insights into the human NuA4/TIP60 acetyltransferase and chromatin remodeling complex.

Yang, Z.Mameri, A.Cattoglio, C.Lachance, C.Florez Ariza, A.J.Luo, J.Humbert, J.Sudarshan, D.Banerjea, A.Galloy, M.Fradet-Turcotte, A.Lambert, J.P.Ranish, J.A.Cote, J.Nogales, E.

(2024) Science 385: eadl5816-eadl5816

  • DOI: https://doi.org/10.1126/science.adl5816
  • Primary Citation of Related Structures:  
    9C47, 9C4B, 9C57, 9C62, 9C6N

  • PubMed Abstract: 

    The human NuA4/TIP60 co-activator complex, a fusion of the yeast SWR1 and NuA4 complexes, both incorporates the histone variant H2A.Z into nucleosomes and acetylates histones H4/H2A/H2A.Z to regulate gene expression and maintain genome stability. Our cryo-electron microscopy studies show that, within the NuA4/TIP60 complex, the EP400 subunit serves as a scaffold holding the different functional modules in specific positions, creating a unique arrangement of the ARP module. EP400 interacts with the TRRAP subunit using a footprint that overlaps with that of the SAGA acetyltransferase complex, preventing the formation of a hybrid complex. Loss of the TRRAP subunit leads to mislocalization of NuA4/TIP60, resulting in the redistribution of H2A.Z and its acetylation across the genome, emphasizing the dual functionality of NuA4/TIP60 as a single macromolecular assembly.


  • Organizational Affiliation

    California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, Berkeley, CA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transformation/transcription domain-associated proteinA [auth C]3,859Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y4A5 (Homo sapiens)
Explore Q9Y4A5 
Go to UniProtKB:  Q9Y4A5
PHAROS:  Q9Y4A5
GTEx:  ENSG00000196367 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y4A5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
E1A-binding protein p400B [auth G]3,159Homo sapiensMutation(s): 0 
EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L91 (Homo sapiens)
Explore Q96L91 
Go to UniProtKB:  Q96L91
PHAROS:  Q96L91
GTEx:  ENSG00000183495 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96L91
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--
Canadian Institutes of Health Research (CIHR)Canada--
Canada Research ChairsCanada--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-14
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Data collection, Database references