9C1W

Structure of AKT2 with compound 3

• PDB DOI: https://doi.org/10.2210/pdb9C1W/pdb

• Classification: TRANSFERASE/INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): Yes 


• Deposited: 2024-05-29 Released: 2024-09-04 
• Deposition Author(s): Craven, G.B., Ma, X., Taunton, J.
• Funding Organization(s): Tobacco-Related Disease Research Program (TRDRP)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.242 
• R-Value Work: 0.205 
• R-Value Observed: 0.207 

Starting Model: experimental

Literature

Mutant-selective AKT1 inhibitors via lysine targeting and neo-zinc chelation

Craven, G.B., Ma, X., Taunton, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 52.66 kDa 
• Atom Count: 3,389 
• Modelled Residue Count: 388 
• Deposited Residue Count: 446 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RAC-beta serine/threonine-protein kinase	A	446	Homo sapiens	Mutation(s): 2  Gene Names: AKT2 EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for P31751 (Homo sapiens) Explore P31751  Go to UniProtKB:  P31751
PHAROS:  P31751 GTEx:  ENSG00000105221

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
XOO (Subject of Investigation/LOI)	B [auth A]	4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde C33 H28 N6 O2 OMBAVJOHMDVMKX-UHFFFAOYSA-N
EDO	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.242 
• R-Value Work: 0.205 
• R-Value Observed: 0.207 
• Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.14	α = 90
b = 76.14	β = 90
c = 153.31	γ = 120

Software Package:

Software Name	Purpose
PHASER	phasing
PHENIX	refinement
xia2	data reduction
xia2	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-04 
Deposition Author(s): Craven, G.B., Ma, X., Taunton, J.

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Funding Organization	Location	Grant Number
Tobacco-Related Disease Research Program (TRDRP)	United States	T32FT4880

Revision History  

• Version 1.0: 2024-09-04
  Type: Initial release