9C08 | pdb_00009c08

Structure of Sialyl transferase from Pasturella Multocida

PDB DOI: https://doi.org/10.2210/pdb9C08/pdb
EM Map EMD-45076: EMDB EMDataResource

Classification: TRANSFERASE
Organism(s): Pasteurella
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-05-24 Released: 2025-06-11
Deposition Author(s): Subramanian, R., Dhanabalan, K.
Funding Organization(s): Department of Biotechnology (DBT, India)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 9C08

This is version 1.0 of the entry. See complete history.

Literature

Ambient Ionization Mass Spectrometry and Cryo-Electron Microscopy for Label-Free Enzyme Characterization

Morato Gutierrez, N.M., Dhanabalan, K.

To be published.

Macromolecule Content

Total Structure Weight: 142.79 kDa
Atom Count: 7,420
Modeled Residue Count: 892
Deposited Residue Count: 1,212
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	A, B, C, D	303	Pasteurella	Mutation(s): 0 Gene Names: PM1174
UniProt
Find proteins for Q9CLP3 (Pasteurella multocida (strain Pm70)) Explore Q9CLP3 Go to UniProtKB: Q9CLP3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9CLP3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.1
MODEL REFINEMENT	PHENIX

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-06-11

Deposition Author(s):

Subramanian, R.

Funding Organization	Location	Grant Number
Department of Biotechnology (DBT, India)	India	DBT/PR12422/MED/31/287/2014

Revision History (Full details and data files)

Version 1.0: 2025-06-11
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.