9B7R | pdb_00009b7r

Fab3-1 in complex with the capsid of Adeno-associated virus type 9

• PDB DOI: https://doi.org/10.2210/pdb9B7R/pdb
• EM Map EMD-44321: EMDB EMDataResource

• Classification: VIRAL PROTEIN/IMMUNE SYSTEM
• Organism(s): Adeno-associated virus, Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2024-03-27 Released: 2025-04-02 
• Deposition Author(s): Mietzsch, M., McKenna, R.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.02 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural characterization of antibody-responses from Zolgensma treatment guides the design of a capsid suitable for redosing

Mietzsch, M., Nelson, A.R., Hsi, J., Zachary, J., Potts, L., Chipman, P., Ghanem, M., Alexander, I.E., Logan, G.J., Huiskonen, J., McKenna, R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 8-mer - A2B2C2D1E1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 8-mer - A2B2C2D2 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Hetero 6-mer - A2B2C2 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Hetero 6-mer - A2B2C2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 384.65 kDa 
• Atom Count: 9,147 
• Modelled Residue Count: 1,167 
• Deposited Residue Count: 3,437 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP1	A, B, C, D, E, F	534	Adeno-associated virus	Mutation(s): 0  Gene Names: cap
UniProt
Find proteins for Q6JC40 (Adeno-associated virus 9) Explore Q6JC40  Go to UniProtKB:  Q6JC40

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab3-1 heavy chain	G [auth H]	128	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab3-1 light chain	H [auth L]	105	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.02 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-04-02 
Deposition Author(s): Mietzsch, M., McKenna, R.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM082946

Revision History  

• Version 1.0: 2025-04-02
  Type: Initial release