9B24 | pdb_00009b24

WT strain gidB mutant mycobacterial ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.47 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Ribosomal RNA methylation by GidB is a capacitor for discrimination of mischarged tRNA

Chen, Y.Young, I.D.Fraser, J.S.Javid, B.

To be published.

Macromolecule Content 

  • Total Structure Weight: 2,279.85 kDa 
  • Atom Count: 146,980 
  • Modeled Residue Count: 10,471 
  • Deposited Residue Count: 11,150 
  • Unique protein chains: 47
  • Unique nucleic acid chains: 4

Macromolecules


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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS3B [auth C]275Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD7 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS4C [auth D]201Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSL7 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS5D [auth E]214Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSG6 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS6E [auth F]96Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0R7F9 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS7F [auth G]156Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QS97 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS8G [auth H]132Mycolicibacterium smegmatisMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS9H [auth I]150Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSP9 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS10I [auth J]101Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD0 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS11J [auth K]138Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSL6 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS12K [auth L]124Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QS96 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS13L [auth M]124Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSL5 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS14BM [auth N]61Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSG2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15N [auth O]89Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QVQ3 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS16O [auth P]156Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QV37 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS17P [auth Q]98Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSE0 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 17
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS18BQ [auth R]84Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0R7F7 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS20R [auth T]86Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0R102 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2S [auth V]277Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QVB8 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2V [auth Z]278Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD4 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 23
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3W [auth a]217Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD1 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 24
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL4X [auth b]215Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 25
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL5Y [auth c]187Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSG1 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 26
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL6Z [auth d]179Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSG4 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 27
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL11AA [auth e]142Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QS45 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 28
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13BA [auth f]147Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSP8 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 29
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL14CA [auth g]122Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSF9 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 30
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL15DA [auth h]147Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSG8 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 31
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL16EA [auth i]138Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD8 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 32
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL17FA [auth j]199Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSL9 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 33
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL18GA [auth k]127Mycolicibacterium smegmatisMutation(s): 0 
UniProt
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Entity ID: 34
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL19HA [auth l]113Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QV42 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 35
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL20IA [auth m]129Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QYU6 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 36
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL21JA [auth n]103Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0R151 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 37
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL22KA [auth o]153Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD6 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 38
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL23LA [auth p]100Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD3 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 39
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL24MA [auth q]105Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSG0 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 40
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL25NA [auth r]215Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0R3D2 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 41
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL27OA [auth s]88Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0R150 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 42
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL28PA [auth t]64Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QV03 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 43
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL29QA [auth u]77Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSD9 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 44
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL10RA [auth v]175Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QS62 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 45
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL30SA [auth w]61Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSG7 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 46
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL32TA [auth x]57Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0R3I9 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 47
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL33AUA [auth y]55Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QS39 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
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Entity ID: 48
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL34VA [auth z]47Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0R7K0 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R7K0 
Go to UniProtKB:  A0R7K0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0R7K0
Sequence Annotations
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Reference Sequence
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Entity ID: 49
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL35WA [auth 1]64Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QYU7 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0QYU7 
Go to UniProtKB:  A0QYU7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0QYU7
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Reference Sequence
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Entity ID: 50
MoleculeChains  Sequence LengthOrganismDetailsImage
50S ribosomal protein L36XA [auth 2]37Mycolicibacterium smegmatisMutation(s): 0 
UniProt
Find proteins for A0QSL4 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0QSL4 
Go to UniProtKB:  A0QSL4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0QSL4
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Reference Sequence
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Entity ID: 1
MoleculeChains LengthOrganismImage
RNA (1528-MER)1,528Mycolicibacterium smegmatis
Sequence Annotations
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Reference Sequence
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Entity ID: 20
MoleculeChains LengthOrganismImage
23S rRNAT [auth Y]3,120Mycolicibacterium smegmatis
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Reference Sequence
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Entity ID: 21
MoleculeChains LengthOrganismImage
5S rRNA118Mycolicibacterium smegmatis
Sequence Annotations
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Reference Sequence
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Entity ID: 51
MoleculeChains LengthOrganismImage
23S rRNA partYA [auth 4]81Mycolicibacterium smegmatis
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN

Query on ZN



Download:Ideal Coordinates CCD File
BZ [auth y],
DJ [auth R],
DZ [auth 2],
YY [auth t],
ZI [auth N]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
AB [auth A]
AC [auth A]
AD [auth A]
AE [auth A]
AF [auth A]
AB [auth A],
AC [auth A],
AD [auth A],
AE [auth A],
AF [auth A],
AG [auth A],
AH [auth A],
AI [auth A],
AJ [auth P],
AK [auth Y],
AL [auth Y],
AM [auth Y],
AN [auth Y],
AO [auth Y],
AP [auth Y],
AQ [auth Y],
AR [auth Y],
AS [auth Y],
AT [auth Y],
AU [auth Y],
AV [auth Y],
AW [auth Y],
AX [auth Y],
AY [auth U],
AZ [auth y],
BB [auth A],
BC [auth A],
BD [auth A],
BE [auth A],
BF [auth A],
BG [auth A],
BH [auth A],
BI [auth A],
BJ [auth Q],
BK [auth Y],
BL [auth Y],
BM [auth Y],
BN [auth Y],
BO [auth Y],
BP [auth Y],
BQ [auth Y],
BR [auth Y],
BS [auth Y],
BT [auth Y],
BU [auth Y],
BV [auth Y],
BW [auth Y],
BX [auth Y],
BY [auth U],
CB [auth A],
CC [auth A],
CD [auth A],
CE [auth A],
CF [auth A],
CG [auth A],
CH [auth A],
CI [auth A],
CJ [auth Q],
CK [auth Y],
CL [auth Y],
CM [auth Y],
CN [auth Y],
CO [auth Y],
CP [auth Y],
CQ [auth Y],
CR [auth Y],
CS [auth Y],
CT [auth Y],
CU [auth Y],
CV [auth Y],
CW [auth Y],
CX [auth Y],
CY [auth U],
CZ [auth 1],
DB [auth A],
DC [auth A],
DD [auth A],
DE [auth A],
DF [auth A],
DG [auth A],
DH [auth A],
DI [auth A],
DK [auth Y],
DL [auth Y],
DM [auth Y],
DN [auth Y],
DO [auth Y],
DP [auth Y],
DQ [auth Y],
DR [auth Y],
DS [auth Y],
DT [auth Y],
DU [auth Y],
DV [auth Y],
DW [auth Y],
DX [auth Y],
DY [auth U],
EB [auth A],
EC [auth A],
ED [auth A],
EE [auth A],
EF [auth A],
EG [auth A],
EH [auth A],
EI [auth A],
EJ [auth R],
EK [auth Y],
EL [auth Y],
EM [auth Y],
EN [auth Y],
EO [auth Y],
EP [auth Y],
EQ [auth Y],
ER [auth Y],
ES [auth Y],
ET [auth Y],
EU [auth Y],
EV [auth Y],
EW [auth Y],
EX [auth Y],
EY [auth U],
FB [auth A],
FC [auth A],
FD [auth A],
FE [auth A],
FF [auth A],
FG [auth A],
FH [auth A],
FI [auth A],
FJ [auth T],
FK [auth Y],
FL [auth Y],
FM [auth Y],
FN [auth Y],
FO [auth Y],
FP [auth Y],
FQ [auth Y],
FR [auth Y],
FS [auth Y],
FT [auth Y],
FU [auth Y],
FV [auth Y],
FW [auth Y],
FX [auth Y],
FY [auth U],
GB [auth A],
GC [auth A],
GD [auth A],
GE [auth A],
GF [auth A],
GG [auth A],
GH [auth A],
GI [auth A],
GJ [auth T],
GK [auth Y],
GL [auth Y],
GM [auth Y],
GN [auth Y],
GO [auth Y],
GP [auth Y],
GQ [auth Y],
GR [auth Y],
GS [auth Y],
GT [auth Y],
GU [auth Y],
GV [auth Y],
GW [auth Y],
GX [auth Y],
GY [auth U],
HB [auth A],
HC [auth A],
HD [auth A],
HE [auth A],
HF [auth A],
HG [auth A],
HH [auth A],
HI [auth A],
HJ [auth T],
HK [auth Y],
HL [auth Y],
HM [auth Y],
HN [auth Y],
HO [auth Y],
HP [auth Y],
HQ [auth Y],
HR [auth Y],
HS [auth Y],
HT [auth Y],
HU [auth Y],
HV [auth Y],
HW [auth Y],
HX [auth Y],
HY [auth U],
IB [auth A],
IC [auth A],
ID [auth A],
IE [auth A],
IF [auth A],
IG [auth A],
IH [auth A],
II [auth A],
IJ [auth T],
IK [auth Y],
IL [auth Y],
IM [auth Y],
IN [auth Y],
IO [auth Y],
IP [auth Y],
IQ [auth Y],
IR [auth Y],
IS [auth Y],
IT [auth Y],
IU [auth Y],
IV [auth Y],
IW [auth Y],
IX [auth Y],
IY [auth U],
JB [auth A],
JC [auth A],
JD [auth A],
JE [auth A],
JF [auth A],
JG [auth A],
JH [auth A],
JI [auth A],
JJ [auth T],
JK [auth Y],
JL [auth Y],
JM [auth Y],
JN [auth Y],
JO [auth Y],
JP [auth Y],
JQ [auth Y],
JR [auth Y],
JS [auth Y],
JT [auth Y],
JU [auth Y],
JV [auth Y],
JW [auth Y],
JX [auth Y],
JY [auth Z],
KB [auth A],
KC [auth A],
KD [auth A],
KE [auth A],
KF [auth A],
KG [auth A],
KH [auth A],
KI [auth A],
KJ [auth Y],
KK [auth Y],
KL [auth Y],
KM [auth Y],
KN [auth Y],
KO [auth Y],
KP [auth Y],
KQ [auth Y],
KR [auth Y],
KS [auth Y],
KT [auth Y],
KU [auth Y],
KV [auth Y],
KW [auth Y],
KX [auth Y],
KY [auth Z],
LB [auth A],
LC [auth A],
LD [auth A],
LE [auth A],
LF [auth A],
LG [auth A],
LH [auth A],
LI [auth A],
LJ [auth Y],
LK [auth Y],
LL [auth Y],
LM [auth Y],
LN [auth Y],
LO [auth Y],
LP [auth Y],
LQ [auth Y],
LR [auth Y],
LS [auth Y],
LT [auth Y],
LU [auth Y],
LV [auth Y],
LW [auth Y],
LX [auth Y],
LY [auth Z],
MB [auth A],
MC [auth A],
MD [auth A],
ME [auth A],
MF [auth A],
MG [auth A],
MH [auth A],
MI [auth A],
MJ [auth Y],
MK [auth Y],
ML [auth Y],
MM [auth Y],
MN [auth Y],
MO [auth Y],
MP [auth Y],
MQ [auth Y],
MR [auth Y],
MS [auth Y],
MT [auth Y],
MU [auth Y],
MV [auth Y],
MW [auth Y],
MX [auth Y],
MY [auth Z],
NB [auth A],
NC [auth A],
ND [auth A],
NE [auth A],
NF [auth A],
NG [auth A],
NH [auth A],
NI [auth A],
NJ [auth Y],
NK [auth Y],
NL [auth Y],
NM [auth Y],
NN [auth Y],
NO [auth Y],
NP [auth Y],
NQ [auth Y],
NR [auth Y],
NS [auth Y],
NT [auth Y],
NU [auth Y],
NV [auth Y],
NW [auth Y],
NX [auth Y],
NY [auth Z],
OB [auth A],
OC [auth A],
OD [auth A],
OE [auth A],
OF [auth A],
OG [auth A],
OH [auth A],
OI [auth A],
OJ [auth Y],
OK [auth Y],
OL [auth Y],
OM [auth Y],
ON [auth Y],
OO [auth Y],
OP [auth Y],
OQ [auth Y],
OR [auth Y],
OS [auth Y],
OT [auth Y],
OU [auth Y],
OV [auth Y],
OW [auth Y],
OX [auth Y],
OY [auth Z],
PB [auth A],
PC [auth A],
PD [auth A],
PE [auth A],
PF [auth A],
PG [auth A],
PH [auth A],
PI [auth A],
PJ [auth Y],
PK [auth Y],
PL [auth Y],
PM [auth Y],
PN [auth Y],
PO [auth Y],
PP [auth Y],
PQ [auth Y],
PR [auth Y],
PS [auth Y],
PT [auth Y],
PU [auth Y],
PV [auth Y],
PW [auth Y],
PX [auth Y],
PY [auth Z],
QB [auth A],
QC [auth A],
QD [auth A],
QE [auth A],
QF [auth A],
QG [auth A],
QH [auth A],
QI [auth D],
QJ [auth Y],
QK [auth Y],
QL [auth Y],
QM [auth Y],
QN [auth Y],
QO [auth Y],
QP [auth Y],
QQ [auth Y],
QR [auth Y],
QS [auth Y],
QT [auth Y],
QU [auth Y],
QV [auth Y],
QW [auth Y],
QX [auth Y],
QY [auth Z],
RB [auth A],
RC [auth A],
RD [auth A],
RE [auth A],
RF [auth A],
RG [auth A],
RH [auth A],
RI [auth E],
RJ [auth Y],
RK [auth Y],
RL [auth Y],
RM [auth Y],
RN [auth Y],
RO [auth Y],
RP [auth Y],
RQ [auth Y],
RR [auth Y],
RS [auth Y],
RT [auth Y],
RU [auth Y],
RV [auth Y],
RW [auth Y],
RX [auth Y],
RY [auth a],
SB [auth A],
SC [auth A],
SD [auth A],
SE [auth A],
SF [auth A],
SG [auth A],
SH [auth A],
SI [auth E],
SJ [auth Y],
SK [auth Y],
SL [auth Y],
SM [auth Y],
SN [auth Y],
SO [auth Y],
SP [auth Y],
SQ [auth Y],
SR [auth Y],
SS [auth Y],
ST [auth Y],
SU [auth Y],
SV [auth Y],
SW [auth Y],
SX [auth Y],
SY [auth b],
TB [auth A],
TC [auth A],
TD [auth A],
TE [auth A],
TF [auth A],
TG [auth A],
TH [auth A],
TI [auth E],
TJ [auth Y],
TK [auth Y],
TL [auth Y],
TM [auth Y],
TN [auth Y],
TO [auth Y],
TP [auth Y],
TQ [auth Y],
TR [auth Y],
TS [auth Y],
TT [auth Y],
TU [auth Y],
TV [auth Y],
TW [auth Y],
TX [auth Y],
TY [auth h],
UB [auth A],
UC [auth A],
UD [auth A],
UE [auth A],
UF [auth A],
UG [auth A],
UH [auth A],
UI [auth E],
UJ [auth Y],
UK [auth Y],
UL [auth Y],
UM [auth Y],
UN [auth Y],
UO [auth Y],
UP [auth Y],
UQ [auth Y],
UR [auth Y],
US [auth Y],
UT [auth Y],
UU [auth Y],
UV [auth Y],
UW [auth Y],
UX [auth Y],
UY [auth i],
VB [auth A],
VC [auth A],
VD [auth A],
VE [auth A],
VF [auth A],
VG [auth A],
VH [auth A],
VI [auth I],
VJ [auth Y],
VK [auth Y],
VL [auth Y],
VM [auth Y],
VN [auth Y],
VO [auth Y],
VP [auth Y],
VQ [auth Y],
VR [auth Y],
VS [auth Y],
VT [auth Y],
VU [auth Y],
VV [auth Y],
VW [auth Y],
VX [auth Y],
VY [auth o],
WB [auth A],
WC [auth A],
WD [auth A],
WE [auth A],
WF [auth A],
WG [auth A],
WH [auth A],
WI [auth K],
WJ [auth Y],
WK [auth Y],
WL [auth Y],
WM [auth Y],
WN [auth Y],
WO [auth Y],
WP [auth Y],
WQ [auth Y],
WR [auth Y],
WS [auth Y],
WT [auth Y],
WU [auth Y],
WV [auth Y],
WW [auth Y],
WX [auth Y],
WY [auth p],
XB [auth A],
XC [auth A],
XD [auth A],
XE [auth A],
XF [auth A],
XG [auth A],
XH [auth A],
XI [auth K],
XJ [auth Y],
XK [auth Y],
XL [auth Y],
XM [auth Y],
XN [auth Y],
XO [auth Y],
XP [auth Y],
XQ [auth Y],
XR [auth Y],
XS [auth Y],
XT [auth Y],
XU [auth Y],
XV [auth Y],
XW [auth Y],
XX [auth Y],
XY [auth t],
YB [auth A],
YC [auth A],
YD [auth A],
YE [auth A],
YF [auth A],
YG [auth A],
YH [auth A],
YI [auth N],
YJ [auth Y],
YK [auth Y],
YL [auth Y],
YM [auth Y],
YN [auth Y],
YO [auth Y],
YP [auth Y],
YQ [auth Y],
YR [auth Y],
YS [auth Y],
YT [auth Y],
YU [auth Y],
YV [auth Y],
YW [auth Y],
YX [auth Y],
ZA [auth A],
ZB [auth A],
ZC [auth A],
ZD [auth A],
ZE [auth A],
ZF [auth A],
ZG [auth A],
ZH [auth A],
ZJ [auth Y],
ZK [auth Y],
ZL [auth Y],
ZM [auth Y],
ZN [auth Y],
ZO [auth Y],
ZP [auth Y],
ZQ [auth Y],
ZR [auth Y],
ZS [auth Y],
ZT [auth Y],
ZU [auth Y],
ZV [auth Y],
ZW [auth Y],
ZX [auth U],
ZY [auth u]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.47 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2_4158
MODEL REFINEMENTISOLDE
RECONSTRUCTIONcisTEMdevelopment

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesF32-GM133129

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-26
    Type: Initial release