Linkage and substrate specificity conferred by NZF ubiquitin binding domains
Michel, M.A., Scutts, S., Komander, D.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Optineurin | A [auth B], E [auth A] | 96 | Homo sapiens | Mutation(s): 0  Gene Names: OPTN, FIP2, GLC1E, HIP7, HYPL, NRP | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96CV9 (Homo sapiens) Explore Q96CV9  Go to UniProtKB:  Q96CV9 | |||||
PHAROS:  Q96CV9 GTEx:  ENSG00000123240  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96CV9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase RNF31 | B [auth F], F [auth E] | 30 | Homo sapiens | Mutation(s): 0  Gene Names: RNF31, ZIBRA EC: 2.3.2.31 | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96EP0 (Homo sapiens) Explore Q96EP0  Go to UniProtKB:  Q96EP0 | |||||
PHAROS:  Q96EP0 GTEx:  ENSG00000092098  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96EP0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin | 152 | Homo sapiens | Mutation(s): 0  Gene Names: UBB | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47  Go to UniProtKB:  P0CG47 | |||||
PHAROS:  P0CG47 GTEx:  ENSG00000170315  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CG47 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | H [auth F], I [auth E] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 247.573 | α = 90 |
b = 72.313 | β = 95.074 |
c = 56.345 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Medical Research Council (MRC, United Kingdom) | United Kingdom | U105192732 |
European Research Council (ERC) | European Union | 724804 |
National Health and Medical Research Council (NHMRC, Australia) | Australia | GNT1178122 |