8ZP8 | pdb_00008zp8

Respirasome open state 1 in presence of metformin(SC-MetO1)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

structural basis for inhibition of mammalian respirasome by metformin and proguanil

Teng, F.He, Z.X.Yang, Y.Q.Guo, R.Y.Hu, Y.Q.Xu, C.Y.Zhou, R.H.Zhang, X.Zhang, S.Zhou, L.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4LA [auth 4L]98Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
Find proteins for P56632 (Sus scrofa)
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 5A, mitochondrialB [auth 5A]102Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1SJ34 (Sus scrofa)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 5B, mitochondrialC [auth 5B]95Sus scrofaMutation(s): 0 
UniProt
Find proteins for Q5S3G4 (Sus scrofa)
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UniProt GroupQ5S3G4
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunitD [auth 6A]76Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A287AEB7 (Sus scrofa)
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UniProt GroupA0A287AEB7
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunitE [auth 6B]82Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1TG97 (Sus scrofa)
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UniProt GroupA0A4X1TG97
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 6CF [auth 6C]70Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1TXH1 (Sus scrofa)
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UniProt GroupA0A4X1TXH1
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 7A1, mitochondrialG [auth 7A]57Sus scrofaMutation(s): 0 
UniProt
Find proteins for Q8SPJ9 (Sus scrofa)
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UniProt GroupQ8SPJ9
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 7B, mitochondrialH [auth 7B]50Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A287BJ57 (Sus scrofa)
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UniProt GroupA0A287BJ57
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 7C, mitochondrialI [auth 7C]47Sus scrofaMutation(s): 0 
UniProt
Find proteins for Q1W0Y2 (Sus scrofa)
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 8J [auth 8B]43Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1VY94 (Sus scrofa)
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1K [auth A1]70Sus scrofaMutation(s): 0 
UniProt
Find proteins for K7GR43 (Sus scrofa)
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2L [auth A2]85Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1RGE3 (Sus scrofa)
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3M [auth A3]83Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1VPG4 (Sus scrofa)
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UniProt GroupA0A4X1VPG4
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5N [auth A5]112Sus scrofaMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6O [auth A6]114Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1SJP6 (Sus scrofa)
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-B14.5aP [auth A7]112Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1VLA2 (Sus scrofa)
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UniProt GroupA0A4X1VLA2
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8Q [auth A8]171Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1SLR1 (Sus scrofa)
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrialR [auth A9]341Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1SL07 (Sus scrofa)
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier proteinS [auth AB],
T [auth AC]
156Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A287AAR5 (Sus scrofa)
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UniProt GroupA0A287AAR5
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialU [auth AK]320Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1SIS9 (Sus scrofa)
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11V [auth AL]140Sus scrofaMutation(s): 0 
UniProt
Find proteins for I3LGM4 (Sus scrofa)
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12W [auth AM]144Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1SQP4 (Sus scrofa)
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UniProt GroupF1SQP4
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13X [auth AN]142Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A8D1NRT6 (Sus scrofa)
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UniProt GroupA0A8D1NRT6
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1Y [auth B1]56Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A8D2CGH8 (Sus scrofa)
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UniProt GroupA0A8D2CGH8
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrialZ [auth B2]67Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A5G2QW32 (Sus scrofa)
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UniProt GroupA0A5G2QW32
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3AA [auth B3]80Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1VD84 (Sus scrofa)
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UniProt GroupA0A4X1VD84
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4BA [auth B4]128Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1T6M0 (Sus scrofa)
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialCA [auth B5]138Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1SGC6 (Sus scrofa)
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UniProt GroupF1SGC6
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-B17DA [auth B6]126Sus scrofaMutation(s): 0 
UniProt
Find proteins for Q2EN80 (Sus scrofa)
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7EA [auth B7]125Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1SCH1 (Sus scrofa)
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialFA [auth B8]156Sus scrofaMutation(s): 0 
UniProt
Find proteins for F1RWL7 (Sus scrofa)
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UniProt GroupF1RWL7
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9GA [auth B9]178Sus scrofaMutation(s): 0 
UniProt
Find proteins for K7GSE5 (Sus scrofa)
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10HA [auth BK]176Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A8D1FAG1 (Sus scrofa)
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UniProt GroupA0A8D1FAG1
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialIA [auth BL]154Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A8D1EYI7 (Sus scrofa)
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 1JA [auth C1]514Sus scrofaMutation(s): 0 
EC: 7.1.1.9
UniProt
Find proteins for O79876 (Sus scrofa)
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UniProt GroupO79876
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 2KA [auth C2]228Sus scrofaMutation(s): 0 
EC: 7.1.1.9
UniProt
Find proteins for P50667 (Sus scrofa)
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 3LA [auth C3]260Sus scrofaMutation(s): 0 
EC: 7.1.1.9
UniProt
Find proteins for Q35916 (Sus scrofa)
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c oxidase subunit 4MA [auth C4]138Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1T8J9 (Sus scrofa)
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrialNA [auth CA]49Sus scrofaMutation(s): 0 
UniProt
Find proteins for A1XQS6 (Sus scrofa)
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UniProt GroupA1XQS6
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] 1 subunit C2OA [auth CB]121Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A480JRW3 (Sus scrofa)
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 1PA [auth N1]318Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
Find proteins for O79874 (Sus scrofa)
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UniProt GroupO79874
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 2QA [auth N2]347Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
Find proteins for O79875 (Sus scrofa)
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 3RA [auth N3]115Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
Find proteins for O79880 (Sus scrofa)
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 4SA [auth N4]459Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
Find proteins for Q7IIB7 (Sus scrofa)
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UniProt GroupQ7IIB7
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 5TA [auth N5]603Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
Find proteins for Q71K68 (Sus scrofa)
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UniProt GroupQ71K68
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase chain 6UA [auth N6]174Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 2, mitochondrialGB [auth Qa],
VA [auth QA]
419Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 1, mitochondrialHB [auth Qb],
WA [auth QB]
446Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome bIB [auth Qc],
XA [auth QC]
379Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c1, heme protein, mitochondrialJB [auth Qd],
YA [auth QD]
326Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit Rieske, mitochondrialFB [auth QK],
KB [auth Qe],
ZA [auth QE]
274Sus scrofaMutation(s): 0 
EC: 7.1.1.8
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 6AB [auth QF],
LB [auth Qf]
67Sus scrofaMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 7BB [auth QG],
MB [auth Qg]
101Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 8CB [auth QH],
NB [auth Qh]
81Sus scrofaMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
Complex III subunit 9DB [auth QI],
OB [auth Qi]
62Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome b-c1 complex subunit 10EB [auth QJ],
PB [auth Qj]
52Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrialQB [auth S1]689Sus scrofaMutation(s): 0 
EC: 7.1.1.2
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-49kDRB [auth S2]430Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-30kDSB [auth S3]208Sus scrofaMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialTB [auth S4]124Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5UB [auth S5]105Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialVB [auth S6]96Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrialWB [auth S7]156Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrialXB [auth S8]176Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialYB [auth V1]431Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialZB [auth V2]217Sus scrofaMutation(s): 0 
EC: 7.1.1.2
UniProt
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
Complex I-9kDAC [auth V3]42Sus scrofaMutation(s): 0 
UniProt
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Small Molecules
Ligands 17 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CDL
Query on CDL

Download Ideal Coordinates CCD File 
BC [auth 4L]
CF [auth Qb]
GE [auth N5]
HE [auth N5]
IC [auth A1]
BC [auth 4L],
CF [auth Qb],
GE [auth N5],
HE [auth N5],
IC [auth A1],
KC [auth A8],
KE [auth QB],
LD [auth C1],
PC [auth AL],
QC [auth AL],
RE [auth QC],
TE [auth QD],
WC [auth B4],
XE [auth QE],
YC [auth B5],
YD [auth N2],
YE [auth QH],
ZD [auth N2],
ZE [auth QH]
CARDIOLIPIN
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
HEA (Subject of Investigation/LOI)
Query on HEA

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DD [auth C1],
ED [auth C1]
HEME-A
C49 H56 Fe N4 O6
ZGGYGTCPXNDTRV-PRYGPKJJSA-L
PC1
Query on PC1

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AD [auth B7]
BE [auth N3]
BF [auth QJ]
DC [auth 6A]
DF [auth Qb]
AD [auth B7],
BE [auth N3],
BF [auth QJ],
DC [auth 6A],
DF [auth Qb],
GC [auth 7C],
HD [auth C1],
ID [auth C1],
IF [auth Qc],
JD [auth C1],
JE [auth N5],
JF [auth Qc],
KD [auth C1],
LF [auth Qd],
MD [auth C1],
OF [auth Qh],
RD [auth C3],
SD [auth C3],
WD [auth N1],
XD [auth N1],
ZC [auth B5]
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
PLX
Query on PLX

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AE [auth N3]
AF [auth QI]
DE [auth N4]
EE [auth N4]
ND [auth C2]
AE [auth N3],
AF [auth QI],
DE [auth N4],
EE [auth N4],
ND [auth C2],
NE [auth QB],
SC [auth AM],
TC [auth AM],
VD [auth CB],
XC [auth B5]
(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL
C42 H89 N O8 P
YVNJQRQLQPWVSQ-IWSHAHEXSA-O
3PE
Query on 3PE

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BD [auth B8]
CD [auth C1]
OD [auth C2]
UC [auth B4]
UD [auth CA]
BD [auth B8],
CD [auth C1],
OD [auth C2],
UC [auth B4],
UD [auth CA],
VE [auth QE]
1,2-Distearoyl-sn-glycerophosphoethanolamine
C41 H82 N O8 P
LVNGJLRDBYCPGB-LDLOPFEMSA-N
NDP (Subject of Investigation/LOI)
Query on NDP

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LC [auth A9]NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
PEE
Query on PEE

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CE [auth N4]
EC [auth 6A]
EF [auth Qc]
FC [auth 6A]
FE [auth N5]
CE [auth N4],
EC [auth 6A],
EF [auth Qc],
FC [auth 6A],
FE [auth N5],
FF [auth Qc],
HC [auth 8B],
IE [auth N5],
JC [auth A3],
LE [auth QB],
ME [auth QB],
MF [auth Qd],
QE [auth QC],
RC [auth AL],
TD [auth C3],
TF [auth S2],
UE [auth QE],
VC [auth B4],
YF [auth S8]
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
C41 H78 N O8 P
MWRBNPKJOOWZPW-NYVOMTAGSA-N
HEC (Subject of Investigation/LOI)
Query on HEC

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KF [auth Qd],
SE [auth QD]
HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
HEM (Subject of Investigation/LOI)
Query on HEM

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GF [auth Qc],
HF [auth Qc],
OE [auth QC],
PE [auth QC]
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
ZMP (Subject of Investigation/LOI)
Query on ZMP

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MC [auth AB],
NC [auth AC]
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate
C25 H49 N2 O8 P S
HDTINWYIVVMRIN-HSZRJFAPSA-N
FMN (Subject of Investigation/LOI)
Query on FMN

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AG [auth V1]FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
ADP (Subject of Investigation/LOI)
Query on ADP

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OC [auth AK]ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
SF4 (Subject of Investigation/LOI)
Query on SF4

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PF [auth S1]
QF [auth S1]
VF [auth S7]
WF [auth S8]
XF [auth S8]
PF [auth S1],
QF [auth S1],
VF [auth S7],
WF [auth S8],
XF [auth S8],
ZF [auth V1]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
FES
Query on FES

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BG [auth V2],
NF [auth Qe],
RF [auth S1],
WE [auth QE]
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
ZN (Subject of Investigation/LOI)
Query on ZN

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CC [auth 5B],
UF [auth S6]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
CU (Subject of Investigation/LOI)
Query on CU

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FD [auth C1],
PD [auth C2],
QD [auth C2]
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
MG (Subject of Investigation/LOI)
Query on MG

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GD [auth C1],
SF [auth S1]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
2MR
Query on 2MR
RB [auth S2]L-PEPTIDE LINKINGC8 H18 N4 O2ARG
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.97 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1
RECONSTRUCTIONcryoSPARCv4.4.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentZJU100 Young Professor

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-17
    Type: Initial release