8ZFK

Caenorhabditis elegans ACR-23 in betaine and monepantel bound state

PDB DOI: https://doi.org/10.2210/pdb8ZFK/pdb
EM Map EMD-60063: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Caenorhabditis elegans, Escherichia coli
Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
Mutation(s): No

Deposited: 2024-05-08 Released: 2024-07-31
Deposition Author(s): Chen, Q.F., Liu, F.L., Li, T.Y., Gong, H.H., Guo, F., Liu, S.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.64 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis of acetylcholine receptor like-23 (ACR-23) activation by anthelmintics monepantel and betaine

Liu, F.L., Li, T.Y., Gong, H.H., Guo, F., Liu, S., Chen, Q.F.

To be published.

Macromolecule Content

Total Structure Weight: 361.22 kDa
Atom Count: 17,285
Modelled Residue Count: 2,060
Deposited Residue Count: 3,100
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Betaine receptor acr-23,Soluble cytochrome b562	A [auth D], B [auth A], C [auth B], D [auth C], E	620	Caenorhabditis elegans, Escherichia coli	Mutation(s): 0 Gene Names: acr-23, 5E130, F59B1.9, cybC
UniProt
Find proteins for G5EG88 (Caenorhabditis elegans) Explore G5EG88 Go to UniProtKB: G5EG88
Find proteins for P0ABE7 (Escherichia coli) Explore P0ABE7 Go to UniProtKB: P0ABE7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P0ABE7G5EG88
Glycosylation
Glycosylation Sites: 3	Glycosylation Focus chain A [auth D] Focus chain B [auth A] Focus chain C [auth B] Focus chain D [auth C] Focus chain E
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

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Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	F, G, H, I, J F, G, H, I, J, K, L, M, N, O	2		N-Glycosylation	Interactions Focus chain F Focus chain G Focus chain H Focus chain I Focus chain J Focus chain K Focus chain L Focus chain M Focus chain N Focus chain O Interactions & Density Focus chain F Focus chain G Focus chain H Focus chain I Focus chain J Focus chain K Focus chain L Focus chain M Focus chain N Focus chain O
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1D8E Query on A1D8E Download Ideal Coordinates CCD File SDF format, chain CA [auth E] SDF format, chain Q [auth D] SDF format, chain T [auth A] SDF format, chain W [auth B] SDF format, chain Z [auth C] MOL2 format, chain CA [auth E] MOL2 format, chain Q [auth D] MOL2 format, chain T [auth A] MOL2 format, chain W [auth B] MOL2 format, chain Z [auth C] mmCIF format, chain CA [auth E] mmCIF format, chain Q [auth D] mmCIF format, chain T [auth A] mmCIF format, chain W [auth B] mmCIF format, chain Z [auth C]	CA [auth E], Q [auth D], T [auth A], W [auth B], Z [auth C]	~{N}-[(2~{S})-2-cyano-1-[5-cyano-2-(trifluoromethyl)phenoxy]propan-2-yl]-4-(trifluoromethylsulfanyl)benzamide C₂₀ H₁₃ F₆ N₃ O₂ S WTERNLDOAPYGJD-SFHVURJKSA-N		Interactions Focus chain CA [auth E] Focus chain Q [auth D] Focus chain T [auth A] Focus chain W [auth B] Focus chain Z [auth C] Interactions & Density Focus chain CA [auth E] Focus chain Q [auth D] Focus chain T [auth A] Focus chain W [auth B] Focus chain Z [auth C]
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain BA [auth E] SDF format, chain P [auth D] SDF format, chain S [auth A] SDF format, chain V [auth B] SDF format, chain Y [auth C] MOL2 format, chain BA [auth E] MOL2 format, chain P [auth D] MOL2 format, chain S [auth A] MOL2 format, chain V [auth B] MOL2 format, chain Y [auth C] mmCIF format, chain BA [auth E] mmCIF format, chain P [auth D] mmCIF format, chain S [auth A] mmCIF format, chain V [auth B] mmCIF format, chain Y [auth C]	BA [auth E], P [auth D], S [auth A], V [auth B], Y [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain BA [auth E] Focus chain P [auth D] Focus chain S [auth A] Focus chain V [auth B] Focus chain Y [auth C] Interactions & Density Focus chain BA [auth E] Focus chain P [auth D] Focus chain S [auth A] Focus chain V [auth B] Focus chain Y [auth C]
BET Query on BET Download Ideal Coordinates CCD File SDF format, chain AA [auth C] SDF format, chain DA [auth E] SDF format, chain R [auth D] SDF format, chain U [auth A] SDF format, chain X [auth B] MOL2 format, chain AA [auth C] MOL2 format, chain DA [auth E] MOL2 format, chain R [auth D] MOL2 format, chain U [auth A] MOL2 format, chain X [auth B] mmCIF format, chain AA [auth C] mmCIF format, chain DA [auth E] mmCIF format, chain R [auth D] mmCIF format, chain U [auth A] mmCIF format, chain X [auth B]	AA [auth C], DA [auth E], R [auth D], U [auth A], X [auth B]	TRIMETHYL GLYCINE C₅ H₁₂ N O₂ KWIUHFFTVRNATP-UHFFFAOYSA-O		Interactions Focus chain AA [auth C] Focus chain DA [auth E] Focus chain R [auth D] Focus chain U [auth A] Focus chain X [auth B] Interactions & Density Focus chain AA [auth C] Focus chain DA [auth E] Focus chain R [auth D] Focus chain U [auth A] Focus chain X [auth B]