8ZFM

Caenorhabditis elegans ACR-23 in betaine bound state

PDB DOI: https://doi.org/10.2210/pdb8ZFM/pdb
EM Map EMD-60065: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Caenorhabditis elegans, Escherichia coli
Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMD

Deposited: 2024-05-08 Released: 2024-07-31
Deposition Author(s): Chen, Q.F., Liu, F.L., Li, T.Y., Gong, H.H., Guo, F., Liu, S.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis of acetylcholine receptor like-23 (ACR-23) activation by anthelmintics monepantel and betaine

Liu, F.L., Li, T.Y., Gong, H.H., Guo, F., Liu, S., Chen, Q.F.

To be published.

Macromolecule Content

Total Structure Weight: 358.85 kDa
Atom Count: 17,120
Modelled Residue Count: 2,060
Deposited Residue Count: 3,100
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Betaine receptor acr-23,Soluble cytochrome b562	A [auth D], B [auth A], C [auth B], D [auth C], E	620	Caenorhabditis elegans, Escherichia coli	Mutation(s): 0 Gene Names: acr-23, 5E130, F59B1.9, cybC Membrane Entity: Yes
UniProt
Find proteins for G5EG88 (Caenorhabditis elegans) Explore G5EG88 Go to UniProtKB: G5EG88
Find proteins for P0ABE7 (Escherichia coli) Explore P0ABE7 Go to UniProtKB: P0ABE7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P0ABE7G5EG88
Glycosylation
Glycosylation Sites: 3	Glycosylation Focus chain A [auth D] Focus chain B [auth A] Focus chain C [auth B] Focus chain D [auth C] Focus chain E
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

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Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	F, G, H, I, J F, G, H, I, J, K, L, M, N, O	2		N-Glycosylation	Interactions Focus chain F Focus chain G Focus chain H Focus chain I Focus chain J Focus chain K Focus chain L Focus chain M Focus chain N Focus chain O Interactions & Density Focus chain F Focus chain G Focus chain H Focus chain I Focus chain J Focus chain K Focus chain L Focus chain M Focus chain N Focus chain O
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG (Subject of Investigation/LOI) Query on NAG Download Ideal Coordinates CCD File SDF format, chain P [auth D] SDF format, chain R [auth A] SDF format, chain T [auth B] SDF format, chain V [auth C] SDF format, chain X [auth E] MOL2 format, chain P [auth D] MOL2 format, chain R [auth A] MOL2 format, chain T [auth B] MOL2 format, chain V [auth C] MOL2 format, chain X [auth E]	P [auth D], R [auth A], T [auth B], V [auth C], X [auth E]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain P [auth D] Focus chain R [auth A] Focus chain T [auth B] Focus chain V [auth C] Focus chain X [auth E] Interactions & Density Focus chain P [auth D] Focus chain R [auth A] Focus chain T [auth B] Focus chain V [auth C] Focus chain X [auth E]
BET (Subject of Investigation/LOI) Query on BET Download Ideal Coordinates CCD File SDF format, chain Q [auth D] SDF format, chain S [auth A] SDF format, chain U [auth B] SDF format, chain W [auth C] SDF format, chain Y [auth E] MOL2 format, chain Q [auth D] MOL2 format, chain S [auth A] MOL2 format, chain U [auth B] MOL2 format, chain W [auth C] MOL2 format, chain Y [auth E]	Q [auth D], S [auth A], U [auth B], W [auth C], Y [auth E]	TRIMETHYL GLYCINE C₅ H₁₂ N O₂ KWIUHFFTVRNATP-UHFFFAOYSA-O		Interactions Focus chain Q [auth D] Focus chain S [auth A] Focus chain U [auth B] Focus chain W [auth C] Focus chain Y [auth E] Interactions & Density Focus chain Q [auth D] Focus chain S [auth A] Focus chain U [auth B] Focus chain W [auth C] Focus chain Y [auth E]