8W8Q

Cryo-EM structure of the GPR101-Gs complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of GPR101-Gs enables identification of ligands with rejuvenating potential.

Yang, Z.Wang, J.Y.Yang, F.Zhu, K.K.Wang, G.P.Guan, Y.Ning, S.L.Lu, Y.Li, Y.Zhang, C.Zheng, Y.Zhou, S.H.Wang, X.W.Wang, M.W.Xiao, P.Yi, F.Zhang, C.Zhang, P.J.Xu, F.Liu, B.H.Zhang, H.Yu, X.Gao, N.Sun, J.P.

(2024) Nat Chem Biol 20: 484-492

  • DOI: https://doi.org/10.1038/s41589-023-01456-6
  • Primary Citation of Related Structures:  
    8W8Q, 8W8R, 8W8S

  • PubMed Abstract: 

    GPR101 is an orphan G protein-coupled receptor actively participating in energy homeostasis. Here we report the cryo-electron microscopy structure of GPR101 constitutively coupled to Gs heterotrimer, which reveals unique features of GPR101, including the interaction of extracellular loop 2 within the 7TM bundle, a hydrophobic chain packing-mediated activation mechanism and the structural basis of disease-related mutants. Importantly, a side pocket is identified in GPR101 that facilitates in silico screening to identify four small-molecule agonists, including AA-14. The structure of AA-14-GPR101-Gs provides direct evidence of the AA-14 binding at the side pocket. Functionally, AA-14 partially restores the functions of GH/IGF-1 axis and exhibits several rejuvenating effects in wild-type mice, which are abrogated in Gpr101-deficient mice. In summary, we provide a structural basis for the constitutive activity of GPR101. The structure-facilitated identification of GPR101 agonists and functional analysis suggest that targeting this orphan receptor has rejuvenating potential.


  • Organizational Affiliation

    NHC Key Laboratory of Otorhinolaryngology, Qilu Hospital of Shandong University, and Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Soluble cytochrome b562,Probable G-protein coupled receptor 101A [auth C]655Escherichia coliHomo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: cybCGPR101
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
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Go to UniProtKB:  P0ABE7
Find proteins for Q96P66 (Homo sapiens)
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PHAROS:  Q96P66
GTEx:  ENSG00000165370 
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UniProt GroupsQ96P66P0ABE7
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms shortB [auth A]394Homo sapiensMutation(s): 9 
Gene Names: GNASGNAS1GSP
EC: 3.6.5
Membrane Entity: Yes 
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Find proteins for P63092 (Homo sapiens)
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PHAROS:  P63092
GTEx:  ENSG00000087460 
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UniProt GroupP63092
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1C [auth B]339Homo sapiensMutation(s): 0 
Gene Names: GNB1
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2D [auth G]58Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Nb35E [auth N]128Homo sapiensMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31725007
National Natural Science Foundation of China (NSFC)China32130055
National Natural Science Foundation of China (NSFC)China92057121
National Science Foundation (NSF, China)China81825022
National Science Foundation (NSF, China)China82225011

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-03
    Type: Initial release
  • Version 1.1: 2024-04-10
    Changes: Database references
  • Version 1.2: 2024-10-30
    Changes: Data collection, Structure summary