Download MendeleyStructural Basis for Methine Excision by a Heme Oxygenase-like Enzyme
Simke, W.C., Walker, M.E., Calderone, L.A., Putz, A.T., Patteson, J.B., Vitro, C.N., Zizola, C.F., Redinbo, M.R., Pandelia, M.E., Grove, T.L., Li, B.(2024) ACS Cent Sci
8W1Q
Aerobic crystal structure of iron-bound FlcD from Pseudomonas aeruginosa
- PDB DOI: https://doi.org/10.2210/pdb8W1Q/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Pseudomonas aeruginosa
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-02-17 Released: 2024-07-31
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.56 Å
- R-Value Free: 0.208
- R-Value Work: 0.176
- R-Value Observed: 0.177
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C | 351 | Pseudomonas aeruginosa | Mutation(s): 0 Gene Names: pqqC_2, CAZ10_19980, DT376_18990, NCTC13621_03444, PAERUG_P19_London_7_VIM_2_05_10_05324 EC: 1.3.3.11 |  | |
UniProt | |||||
Find proteins for A0A0C7AN42 (Pseudomonas aeruginosa) Explore A0A0C7AN42 Go to UniProtKB: A0A0C7AN42 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0C7AN42 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | G [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| FE2 (Subject of Investigation/LOI) Query on FE2 | C [auth A], F [auth B] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N |  | ||
| K Query on K | D [auth A], H [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| MG Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.56 Å
- R-Value Free: 0.208
- R-Value Work: 0.176
- R-Value Observed: 0.177
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.461 | α = 90 |
| b = 83.551 | β = 97.702 |
| c = 68.829 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-07-31 Deposition Author(s): Walker, M.E., Grove, T.L., Li, B., Redinbo, M.R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM148685 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM137286 |
Revision History (Full details and data files)
- Version 1.0: 2024-07-31
Type: Initial release
