8U2Y

Solution structure of the PHD6 finger of MLL4 bound to TET3


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

MLL4 binds TET3.

Becht, D.C.Mohid, S.A.Lee, J.E.Zandian, M.Benz, C.Biswas, S.Sinha, V.K.Ivarsson, Y.Ge, K.Zhang, Y.Kutateladze, T.G.

(2024) Structure 32: 706-714.e3

  • DOI: https://doi.org/10.1016/j.str.2024.03.005
  • Primary Citation of Related Structures:  
    8U2Y

  • PubMed Abstract: 

    Human mixed lineage leukemia 4 (MLL4), also known as KMT2D, regulates cell type specific transcriptional programs through enhancer activation. Along with the catalytic methyltransferase domain, MLL4 contains seven less characterized plant homeodomain (PHD) fingers. Here, we report that the sixth PHD finger of MLL4 (MLL4 PHD6 ) binds to the hydrophobic motif of ten-eleven translocation 3 (TET3), a dioxygenase that converts methylated cytosine into oxidized derivatives. The solution NMR structure of the TET3-MLL4 PHD6 complex and binding assays show that, like histone H4 tail, TET3 occupies the hydrophobic site of MLL4 PHD6 , and that this interaction is conserved in the seventh PHD finger of homologous MLL3 (MLL3 PHD7 ). Analysis of genomic localization of endogenous MLL4 and ectopically expressed TET3 in mouse embryonic stem cells reveals a high degree overlap on active enhancers and suggests a potential functional relationship of MLL4 and TET3.


  • Organizational Affiliation

    Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Methylcytosine dioxygenase TET39Homo sapiensMutation(s): 0 
Gene Names: TET3KIAA0401
EC: 1.14.11.80
UniProt & NIH Common Fund Data Resources
Find proteins for O43151 (Homo sapiens)
Explore O43151 
Go to UniProtKB:  O43151
GTEx:  ENSG00000187605 
Entity Groups  
UniProt GroupO43151
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone-lysine N-methyltransferase 2D60Homo sapiensMutation(s): 0 
Gene Names: KMT2DALRMLL2MLL4
EC: 2.1.1.364
UniProt & NIH Common Fund Data Resources
Find proteins for O14686 (Homo sapiens)
Explore O14686 
Go to UniProtKB:  O14686
GTEx:  ENSG00000167548 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14686
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release