Download MendeleyOxidative rearrangement of tryptophan to indole nitrile by a single diiron enzyme
Adak, S., Ye, N., Calderone, L.A., Schafer, R.J.B., Lukowski, A.L., Pandelia, M.-E., Drennan, C.L., Moore, B.S.To be published.
8TWW
Crystal structure of nitrile synthase AetD with substrate bound and cofactor fully assembled
- PDB DOI: https://doi.org/10.2210/pdb8TWW/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aetokthonos hydrillicola
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-08-21 Released: 2024-08-28
- Funding Organization(s): Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.218
- R-Value Work: 0.195
- R-Value Observed: 0.196
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| AetD | 260 | Aetokthonos hydrillicola | Mutation(s): 0 Gene Names: aetD |  | |
UniProt | |||||
Find proteins for A0A861B387 (Aetokthonos hydrillicola Thurmond2011) Explore A0A861B387 Go to UniProtKB: A0A861B387 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A861B387 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 67I (Subject of Investigation/LOI) Query on 67I | C [auth A], G [auth B] | (2S)-2-azanyl-3-[5,7-bis(bromanyl)-1H-indol-3-yl]propanoic acid C11 H10 Br2 N2 O2 UURVQGNSCUCIQS-VIFPVBQESA-N |  | ||
| FE Query on FE | D [auth A], E [auth A], F [auth A], H [auth B], I [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.218
- R-Value Work: 0.195
- R-Value Observed: 0.196
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.98 | α = 90 |
| b = 88.131 | β = 90 |
| c = 102.806 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| Coot | model building |
| PHENIX | refinement |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-08-28 Deposition Author(s): Ye, N., Drennan, C.L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Howard Hughes Medical Institute (HHMI) | United States | -- |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35-GM126982 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | P30-GM124165 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | P30-GM133894 |
Revision History (Full details and data files)
- Version 1.0: 2024-08-28
Type: Initial release
