Download MendeleyStructure of a HEPES bound TRAP transporter substrate binding protein.
Newton-Vesty, M.C., Dobson, R.C.J.To be published.
8TRP
Structure of a HEPES bound TRAP transporter substrate binding protein.
- PDB DOI: https://doi.org/10.2210/pdb8TRP/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Oleidesulfovibrio alaskensis G20
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-08-10 Released: 2024-08-28
- Funding Organization(s): Marsden Fund
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 Å
- R-Value Free: 0.229
- R-Value Work: 0.175
Starting Model: in silico
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wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Isethionate-binding periplasmic protein DctP | 336 | Oleidesulfovibrio alaskensis G20 | Mutation(s): 0 Gene Names: dctP, Dde_1275 |  | |
UniProt | |||||
Find proteins for Q312S0 (Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)) Explore Q312S0 Go to UniProtKB: Q312S0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q312S0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | B [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 Å
- R-Value Free: 0.229
- R-Value Work: 0.175
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.588 | α = 90 |
| b = 73.208 | β = 90 |
| c = 94.818 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOLREP | phasing |
| iMOSFLM | data reduction |
| Aimless | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-08-28 Deposition Author(s): Newton-Vesty, M.C., Dobson, R.C.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Marsden Fund | New Zealand | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-08-28
Type: Initial release
