Mutation-induced shift of the photosystem II active site reveals insight into conserved water channels
Flesher, D.A., Brudvig, G.W.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II protein D1 2 | A, V [auth a] | 360 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P16033 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P16033  Go to UniProtKB:  P16033 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16033 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II CP47 reaction center protein | B, W [auth b] | 507 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P05429 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P05429  Go to UniProtKB:  P05429 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05429 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II CP43 reaction center protein | C, X [auth c] | 460 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P09193 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P09193  Go to UniProtKB:  P09193 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09193 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II D2 protein | D, Y [auth d] | 352 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P09192 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P09192  Go to UniProtKB:  P09192 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09192 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome b559 subunit alpha | E, Z [auth e] | 81 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P09190 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P09190  Go to UniProtKB:  P09190 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09190 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome b559 subunit beta | AA [auth f], F | 44 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P09191 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P09191  Go to UniProtKB:  P09191 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09191 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein H | BA [auth h], G [auth H] | 64 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P14835 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P14835  Go to UniProtKB:  P14835 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14835 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein I | CA [auth i], H [auth I] | 38 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q54697 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore Q54697  Go to UniProtKB:  Q54697 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q54697 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein J | DA [auth j], I [auth J] | 39 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P73070 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P73070  Go to UniProtKB:  P73070 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P73070 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein K | EA [auth k], J [auth K] | 45 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P15819 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P15819  Go to UniProtKB:  P15819 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P15819 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein L | FA [auth l], K [auth L] | 39 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q55354 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore Q55354  Go to UniProtKB:  Q55354 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q55354 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein M | GA [auth m], L [auth M] | 35 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P72701 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P72701  Go to UniProtKB:  P72701 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P72701 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II manganese-stabilizing polypeptide | HA [auth o], M [auth O] | 274 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P10549 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P10549  Go to UniProtKB:  P10549 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P10549 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sll1638 protein | IA [auth q], N [auth Q] | 149 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P73048 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P73048  Go to UniProtKB:  P73048 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P73048 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II protein Y | JA [auth r], O [auth R] | 39 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P73676 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P73676  Go to UniProtKB:  P73676 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P73676 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein T | KA [auth t], P [auth T] | 31 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P74787 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P74787  Go to UniProtKB:  P74787 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P74787 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II 12 kDa extrinsic protein | LA [auth u], Q [auth U] | 131 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q55332 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore Q55332  Go to UniProtKB:  Q55332 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q55332 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cytochrome c-550 | MA [auth v], R [auth V] | 160 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q55013 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore Q55013  Go to UniProtKB:  Q55013 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q55013 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center X protein | NA [auth x], S [auth X] | 39 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P72575 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P72575  Go to UniProtKB:  P72575 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P72575 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein Ycf12 | OA [auth y], T [auth Y] | 39 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for Q55438 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore Q55438  Go to UniProtKB:  Q55438 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q55438 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem II reaction center protein Z | PA [auth z], U [auth Z] | 62 | Synechocystis sp. PCC 6803 | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P73528 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P73528  Go to UniProtKB:  P73528 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P73528 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 16 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | AD [auth C] CE [auth H] KH [auth c] LH [auth c] MH [auth c] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CLA Query on CLA | AG [auth b] AH [auth c] BG [auth b] BH [auth c] CG [auth b] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
PHO Query on PHO | HD [auth D], IF [auth a], TH [auth d], WA [auth A] | PHEOPHYTIN A C55 H74 N4 O5 CQIKWXUXPNUNDV-RCBXBCQGSA-N | |||
SQD Query on SQD | AC [auth B] BB [auth A] BE [auth H] CB [auth A] JC [auth C] | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL C41 H78 O12 S RVUUQPKXGDTQPG-JUDHQOGESA-N | |||
LMG Query on LMG | AI [auth d] BC [auth B] BD [auth C] DB [auth A] DD [auth C] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
PL9 Query on PL9 | AB [auth A], KD [auth D], MF [auth a], WH [auth d] | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE C53 H80 O2 FKUYMLZIRPABFK-UHFFFAOYSA-N | |||
LHG Query on LHG | BF [auth Z] FI [auth e] GC [auth B] HC [auth B] LD [auth D] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
HEM Query on HEM | EJ [auth v], HI [auth e], SE [auth V], VD [auth E] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
RRX Query on RRX | LI [auth h], ZD [auth H] | (3R)-beta,beta-caroten-3-ol C40 H56 O DMASLKHVQRHNES-FKKUPVFPSA-N | |||
BCR Query on BCR | AF [auth Z] II [auth f] JG [auth b] JH [auth c] KE [auth K] | BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N | |||
LMT Query on LMT | AE [auth H] AJ [auth m] BI [auth d] BJ [auth m] CC [auth B] | DODECYL-BETA-D-MALTOSIDE C24 H46 O11 NLEBIOOXCVAHBD-QKMCSOCLSA-N | |||
OEX (Subject of Investigation/LOI) Query on OEX | CF [auth a], QA [auth A] | CA-MN4-O5 CLUSTER Ca Mn4 O5 SEXWDHMBWJEXOJ-UHFFFAOYSA-N | |||
BCT Query on BCT | GB [auth A], SF [auth a] | BICARBONATE ION C H O3 BVKZGUZCCUSVTD-UHFFFAOYSA-M | |||
FE2 Query on FE2 | DF [auth a], RA [auth A] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N | |||
CA Query on CA | DJ [auth u] FJ [auth v] ME [auth K] RE [auth U] TE [auth V] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL Query on CL | EF [auth a], FF [auth a], SA [auth A], TA [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
FME Query on FME | CA [auth i], H [auth I] | L-PEPTIDE LINKING | C6 H11 N O3 S | MET |
Funding Organization | Location | Grant Number |
---|---|---|
Department of Energy (DOE, United States) | United States | -- |