8TKU

ZIG-4-INS-6 complex, primitive monoclinic form

PDB DOI: https://doi.org/10.2210/pdb8TKU/pdb

Classification: SIGNALING PROTEIN/PROTEIN BINDING
Organism(s): Caenorhabditis elegans
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2023-07-25 Released: 2024-08-28
Deposition Author(s): Cheng, S., Baltrusaitis, E., Aziz, Z., Nawrocka, W.I., Ozkan, E.
Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.240
R-Value Work: 0.197
R-Value Observed: 0.198

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Nematode Extracellular Protein Interactome Expands Connections between Signaling Pathways

Cheng, S., Baltrusaitis, E., Aziz, Z., Nawrocka, W.I., Ozkan, E.

To be published.

Macromolecule Content

Total Structure Weight: 120.75 kDa
Atom Count: 7,794
Modelled Residue Count: 1,037
Deposited Residue Count: 1,096
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Zwei Ig domain protein zig-4	A, C, E, G	214	Caenorhabditis elegans	Mutation(s): 0 Gene Names: zig-4
UniProt
Find proteins for G5ECB1 (Caenorhabditis elegans) Explore G5ECB1 Go to UniProtKB: G5ECB1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G5ECB1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable insulin-like peptide beta-type 5	B, D, F, H	60	Caenorhabditis elegans	Mutation(s): 0 Gene Names: ins-6
UniProt
Find proteins for P56174 (Caenorhabditis elegans) Explore P56174 Go to UniProtKB: P56174
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P56174
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.240
R-Value Work: 0.197
R-Value Observed: 0.198
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.839	α = 90
b = 55.739	β = 93.78
c = 149.945	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-08-28

Deposition Author(s):

Baltrusaitis, E.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)	United States	R01NS097161

Revision History (Full details and data files)

Version 1.0: 2024-08-28
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.