8T7C

Crystal structure of human phospholipase C gamma 2

• PDB DOI: https://doi.org/10.2210/pdb8T7C/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Trichoplusia ni
• Mutation(s): No 


• Deposited: 2023-06-20 Released: 2024-06-26 
• Deposition Author(s): Chen, Y., Choi, H., Zhuang, N., Hu, L., Qian, D., Wang, J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 0.282 
• R-Value Work: 0.227 
• R-Value Observed: 0.230 

Literature

The crystal and cryo-EM structures of PLCg2 reveal dynamic inter-domain recognitions in autoinhibition

Shin, Y., Plummer, A.M., Mungenast, A., Choi, H., TenDyke, K., Zhu, X., Shepard, J., Zhuang, N., Hu, L., Qian, D., Wang, J., Poda, S., Liao, M., Chen, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 136.16 kDa 
• Atom Count: 8,400 
• Modelled Residue Count: 1,001 
• Deposited Residue Count: 1,166 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2	A	1,166	Homo sapiens	Mutation(s): 0  Gene Names: PLCG2 EC: 3.1.4.11
UniProt & NIH Common Fund Data Resources
Find proteins for P16885 (Homo sapiens) Explore P16885  Go to UniProtKB:  P16885
PHAROS:  P16885 GTEx:  ENSG00000197943

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	C [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
CA (Subject of Investigation/LOI)	B [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.55 Å
• R-Value Free: 0.282 
• R-Value Work: 0.227 
• R-Value Observed: 0.230 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.34	α = 90
b = 97.14	β = 90
c = 180.92	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
PHASER	phasing
Aimless	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-26 
Deposition Author(s): Chen, Y., Choi, H., Zhuang, N., Hu, L., Qian, D., Wang, J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-06-26
  Type: Initial release