8T7C

Crystal structure of human phospholipase C gamma 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.230 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

The crystal and cryo-EM structures of PLC gamma 2 reveal dynamic interdomain recognitions in autoinhibition.

Shin, Y.C.Plummer-Medeiros, A.M.Mungenast, A.Choi, H.W.TenDyke, K.Zhu, X.Shepard, J.Sanders, K.Zhuang, N.Hu, L.Qian, D.Song, K.Xu, C.Wang, J.Poda, S.B.Liao, M.Chen, Y.

(2024) Sci Adv 10: eadn6037-eadn6037

  • DOI: https://doi.org/10.1126/sciadv.adn6037
  • Primary Citation of Related Structures:  
    8JQG, 8JQH, 8JQI, 8T7C

  • PubMed Abstract: 

    Phospholipase C gamma 2 (PLCγ2) plays important roles in cell signaling downstream of various membrane receptors. PLCγ2 contains a multidomain inhibitory region critical for its regulation, while it has remained unclear how these domains contribute to PLCγ2 activity modulation. Here we determined three structures of human PLCγ2 in autoinhibited states, which reveal dynamic interactions at the autoinhibition interface, involving the conformational flexibility of the Src homology 3 (SH3) domain in the inhibitory region, and its previously unknown interaction with a carboxyl-terminal helical domain in the core region. We also determined a structure of PLCγ2 bound to the kinase domain of fibroblast growth factor receptor 1 (FGFR1), which demonstrates the recognition of FGFR1 by the nSH2 domain in the inhibitory region of PLCγ2. Our results provide structural insights into PLCγ2 regulation that will facilitate future mechanistic studies to understand the entire activation process.


  • Organizational Affiliation

    Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-21,166Homo sapiensMutation(s): 0 
Gene Names: PLCG2
EC: 3.1.4.11
UniProt & NIH Common Fund Data Resources
Find proteins for P16885 (Homo sapiens)
Explore P16885 
Go to UniProtKB:  P16885
PHAROS:  P16885
GTEx:  ENSG00000197943 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16885
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.230 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.34α = 90
b = 97.14β = 90
c = 180.92γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
PHASERphasing
Aimlessdata scaling

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-26
    Type: Initial release
  • Version 1.1: 2024-12-11
    Changes: Database references, Structure summary