8SXJ

CH505 Disulfide Stapled SOSIP Bound to CH235.12 Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Microsecond dynamics control the HIV-1 Envelope conformation.

Bennett, A.L.Edwards, R.Kosheleva, I.Saunders, C.Bililign, Y.Williams, A.Bubphamala, P.Manosouri, K.Anasti, K.Saunders, K.O.Alam, S.M.Haynes, B.F.Acharya, P.Henderson, R.

(2024) Sci Adv 10: eadj0396-eadj0396

  • DOI: https://doi.org/10.1126/sciadv.adj0396
  • Primary Citation of Related Structures:  
    8SXI, 8SXJ

  • PubMed Abstract: 

    The HIV-1 Envelope (Env) glycoprotein facilitates host cell fusion through a complex series of receptor-induced structural changes. Although remarkable progress has been made in understanding the structures of various Env conformations, microsecond timescale dynamics have not been studied experimentally. Here, we used time-resolved, temperature-jump small-angle x-ray scattering to monitor structural rearrangements in an HIV-1 Env SOSIP ectodomain construct with microsecond precision. In two distinct Env variants, we detected a transition that correlated with known Env structure rearrangements with a time constant in the hundreds of microseconds range. A previously unknown structural transition was also observed, which occurred with a time constant below 10 μs, and involved an order-to-disorder transition in the trimer apex. Using this information, we engineered an Env SOSIP construct that locks the trimer in the prefusion closed state by connecting adjacent protomers via disulfides. Our findings show that the microsecond timescale structural dynamics play an essential role in controlling the Env conformation with impacts on vaccine design.


  • Organizational Affiliation

    Duke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoprotein gp160
A, E, I
456Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: env
UniProt
Find proteins for M4M3Q1 (Human immunodeficiency virus 1)
Explore M4M3Q1 
Go to UniProtKB:  M4M3Q1
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UniProt GroupM4M3Q1
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
HIV-1 gp41
B, F, J
126Human immunodeficiency virus 1Mutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
CH235.12 Heavy Chain
C, G, K
122Homo sapiensMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
CH235.12 Light Chain
D, H, L
105Homo sapiensMutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-14
    Type: Initial release