High Affinity nanobodies against GFP
Ketaren, N.E., Rout, M.P., Almo, S.To be published.
Experimental Data Snapshot
Starting Models: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Green fluorescent protein | 253 | Aequorea victoria | Mutation(s): 1  Gene Names: GFP | ![]() | |
UniProt | |||||
Find proteins for P42212 (Aequorea victoria) Explore P42212  Go to UniProtKB:  P42212 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P42212 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
LaG16 | C [auth D], D [auth C] | 148 | Lama glama | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | EA [auth C] FA [auth C] GA [auth C] L [auth B] V [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | AA [auth D] BA [auth D] CA [auth D] DA [auth D] HA [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | K [auth A], LA [auth C], R [auth B], S [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | MA [auth C], T [auth B], U [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | |||
NH4 Query on NH4 | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | AMMONIUM ION H4 N QGZKDVFQNNGYKY-UHFFFAOYSA-O |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
CR2 Query on CR2 | A, B | L-PEPTIDE LINKING | C13 H13 N3 O4 | GLY, TYR, GLY |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 131.772 | α = 90 |
b = 131.772 | β = 90 |
c = 153.58 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-3000 | data scaling |
PDB_EXTRACT | data extraction |
DENZO | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |