8RKV

Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsB domain local-refinement map


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.11 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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Literature

Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.

Tenjo-Castano, F.Sofos, N.Stutzke, L.S.Temperini, P.Fuglsang, A.Pape, T.Mesa, P.Montoya, G.

(2024) Mol Cell 84: 2353

  • DOI: https://doi.org/10.1016/j.molcel.2024.05.005
  • Primary Citation of Related Structures:  
    8AXA, 8AXB, 8RDU, 8RKT, 8RKU, 8RKV

  • PubMed Abstract: 

    CRISPR-associated transposons (CASTs) are mobile genetic elements that co-opt CRISPR-Cas systems for RNA-guided DNA transposition. CASTs integrate large DNA cargos into the attachment (att) site independently of homology-directed repair and thus hold promise for eukaryotic genome engineering. However, the functional diversity and complexity of CASTs hinder an understanding of their mechanisms. Here, we present the high-resolution cryoelectron microscopy (cryo-EM) structure of the reconstituted ∼1 MDa post-transposition complex of the type V-K CAST, together with different assembly intermediates and diverse TnsC filament lengths, thus enabling the recapitulation of the integration complex formation. The results of mutagenesis experiments probing the roles of specific residues and TnsB-binding sites show that transposition activity can be enhanced and suggest that the distance between the PAM and att sites is determined by the lengths of the TnsB C terminus and the TnsC filament. This singular model of RNA-guided transposition provides a foundation for repurposing the system for genome-editing applications.


  • Organizational Affiliation

    Structural Molecular Biology Group, Novo Nordisk Foundation Centre for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark.


Macromolecules

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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
TnsBG [auth R],
H [auth S],
I [auth T],
J [auth U]
584Scytonema hofmanniiMutation(s): 0 
UniProt
Find proteins for A0A979HMQ2 ([Scytonema hofmanni] UTEX 2349)
Explore A0A979HMQ2 
Go to UniProtKB:  A0A979HMQ2
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A979HMQ2
Sequence Annotations
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Entity ID: 1
MoleculeChains LengthOrganismImage
Non-target strand - LEA [auth 2]68Scytonema hofmannii
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Entity ID: 2
MoleculeChains LengthOrganismImage
Target strand - LEB [auth 3]133Scytonema hofmannii
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Entity ID: 3
MoleculeChains LengthOrganismImage
LEC [auth 4]75Scytonema hofmannii
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Entity ID: 4
MoleculeChains LengthOrganismImage
RED [auth 5]74Scytonema hofmannii
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Entity ID: 5
MoleculeChains LengthOrganismImage
Non-target strand - REE [auth 6]79Scytonema hofmannii
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Entity ID: 6
MoleculeChains LengthOrganismImage
Target strandF [auth 7]15Scytonema hofmannii
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.11 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.4
MODEL REFINEMENTPHENIX
MODEL REFINEMENTCoot
MODEL REFINEMENTISOLDE

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Novo Nordisk FoundationDenmarkNNF14CC0001
European Research Council (ERC)European Union101096548

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release
  • Version 1.1: 2024-07-03
    Changes: Data collection, Database references