8RBS

Emiliania huxleyi virus 201 (EhV-201) asymmetrical unit of capsid proteins predicted by AlphaFold2 fitted into the cryo-EM density of EhV-201 virion composite map.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 18.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure and replication cycle of a virus infecting climate-modulating alga Emiliania huxleyi.

Homola, M.Buttner, C.R.Fuzik, T.Krepelka, P.Holbova, R.Novacek, J.Chaillet, M.L.Zak, J.Grybchuk, D.Forster, F.Wilson, W.H.Schroeder, D.C.Plevka, P.

(2024) Sci Adv 10: eadk1954-eadk1954

  • DOI: https://doi.org/10.1126/sciadv.adk1954
  • Primary Citation of Related Structures:  
    8RBS, 8RBT

  • PubMed Abstract: 

    The globally distributed marine alga Emiliania huxleyi has cooling effect on the Earth's climate. The population density of E. huxleyi is restricted by Nucleocytoviricota viruses, including E. huxleyi virus 201 (EhV-201). Despite the impact of E. huxleyi viruses on the climate, there is limited information about their structure and replication. Here, we show that the dsDNA genome inside the EhV-201 virion is protected by an inner membrane, capsid, and outer membrane. EhV-201 virions infect E. huxleyi by using fivefold vertices to bind to and fuse the virus' inner membrane with the cell plasma membrane. Progeny virions assemble in the cytoplasm at the surface of endoplasmic reticulum-derived membrane segments. Genome packaging initiates synchronously with the capsid assembly and completes through an aperture in the forming capsid. The genome-filled capsids acquire an outer membrane by budding into intracellular vesicles. EhV-201 infection induces a loss of surface protective layers from E. huxleyi cells, which enables the continuous release of virions by exocytosis.


  • Organizational Affiliation

    Central European Institute of Technology, Masaryk University, Brno, Czech Republic.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein496Emiliania huxleyi virus 201Mutation(s): 0 
UniProt
Find proteins for G9E4T6 (Emiliania huxleyi virus 201)
Explore G9E4T6 
Go to UniProtKB:  G9E4T6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG9E4T6
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Penton proteinGC [auth K]663Emiliania huxleyi virus 201Mutation(s): 0 
UniProt
Find proteins for Q4A2T2 (Emiliania huxleyi virus 86 (isolate United Kingdom/English Channel/1999))
Explore Q4A2T2 
Go to UniProtKB:  Q4A2T2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4A2T2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 18.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Grant Agency of the Czech RepublicCzech RepublicGX19-25982X
European Research Council (ERC)European Union101043454

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release
  • Version 1.1: 2024-04-24
    Changes: Database references