Beyond static structures: quantitative dynamics in the eukaryotic RNA exosome complex
Liebau, J., Lazzaretti, D., Bichler, A., Pilsl, M., Sprangers, R.(2024) bioRxiv 
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Starting Models: in silico
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(2024) bioRxiv 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Rrp45 | 293 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: CTHT_0027490 | ![]() | |
UniProt | |||||
Find proteins for G0S755 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S755  Go to UniProtKB:  G0S755 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G0S755 | ||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Exoribonuclease phosphorolytic domain-containing protein | 284 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: CTHT_0055610 | ![]() | |
UniProt | |||||
Find proteins for G0SC21 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SC21  Go to UniProtKB:  G0SC21 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G0SC21 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Exoribonuclease-like protein | 357 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: CTHT_0014300 | ![]() | |
UniProt | |||||
Find proteins for G0S1P1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S1P1  Go to UniProtKB:  G0S1P1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G0S1P1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Exoribonuclease phosphorolytic domain-containing protein | 258 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: CTHT_0056790 | ![]() | |
UniProt | |||||
Find proteins for G0SCD1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SCD1  Go to UniProtKB:  G0SCD1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G0SCD1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Exoribonuclease phosphorolytic domain-containing protein | 413 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: CTHT_0002870 | ![]() | |
UniProt | |||||
Find proteins for G0RZG4 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0RZG4  Go to UniProtKB:  G0RZG4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G0RZG4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Exosome complex component MTR3 | 284 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: MTR3, CTHT_0115690 | ![]() | |
UniProt | |||||
Find proteins for P0CT46 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore P0CT46  Go to UniProtKB:  P0CT46 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CT46 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribosomal RNA-processing protein 40 | 256 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: CTHT_0008000 | ![]() | |
UniProt | |||||
Find proteins for G0RZX8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0RZX8  Go to UniProtKB:  G0RZX8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G0RZX8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative exosome complex protein | 358 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: CTHT_0045080 | ![]() | |
UniProt | |||||
Find proteins for G0S9A0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0S9A0  Go to UniProtKB:  G0S9A0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G0S9A0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative exosome 3'->5 protein | 220 | Thermochaetoides thermophila DSM 1495 | Mutation(s): 0  Gene Names: CTHT_0062250 | ![]() | |
UniProt | |||||
Find proteins for G0SE33 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)) Explore G0SE33  Go to UniProtKB:  G0SE33 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G0SE33 | ||||
Sequence AnnotationsExpand | |||||
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Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.20.1-4487 |
MODEL REFINEMENT | ISOLDE | 1.6 |
MODEL REFINEMENT | Coot | 0.9.6 |
RECONSTRUCTION | RELION | 4.0.1 |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation (DFG) | Germany | SP 1324/3-1 |