8PEL

Structure of C. thermophilum RNA exosome core

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.81 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.246 

Starting Models: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Beyond static structures: quantitative dynamics in the eukaryotic RNA exosome complex

Liebau, J., Lazzaretti, D., Bichler, A., Pilsl, M., Sprangers, R.

(2024) bioRxiv 


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp45293Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0027490
UniProt
Find proteins for G0S755 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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UniProt GroupG0S755
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Exoribonuclease phosphorolytic domain-containing protein284Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0055610
UniProt
Find proteins for G0SC21 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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UniProt GroupG0SC21
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Exoribonuclease-like protein357Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0014300
UniProt
Find proteins for G0S1P1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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UniProt GroupG0S1P1
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Exoribonuclease phosphorolytic domain-containing protein258Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0056790
UniProt
Find proteins for G0SCD1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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UniProt GroupG0SCD1
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Exoribonuclease phosphorolytic domain-containing protein413Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0002870
UniProt
Find proteins for G0RZG4 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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UniProt GroupG0RZG4
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Exosome complex component MTR3284Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: MTR3, CTHT_0115690
UniProt
Find proteins for P0CT46 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal RNA-processing protein 40256Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0008000
UniProt
Find proteins for G0RZX8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Putative exosome complex protein358Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0045080
UniProt
Find proteins for G0S9A0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Putative exosome 3'->5 protein220Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0062250
UniProt
Find proteins for G0SE33 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.81 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.243 
  • R-Value Observed: 0.246 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 100.525α = 90
b = 148.385β = 90
c = 195.065γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
Cootmodel building
PHENIXphasing
PHENIXrefinement
ISOLDEmodel building

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySP 1324/3-1

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-26
    Type: Initial release