8QR1

Cryo-EM structure of the human Tip60 complex

• PDB DOI: https://doi.org/10.2210/pdb8QR1/pdb
• EM Map EMD-18611: EMDB EMDataResource

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2023-10-06 Released: 2024-08-07 
• Deposition Author(s): Li, C., Smirnova, E., Schnitzler, C., Crucifix, C., Concordet, J.P., Brion, A., Poterszman, A., Schultz, P., Papai, G., Ben-Shem, A.
• Funding Organization(s): La ligue contre le cancer

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.40 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of human TIP60-C histone exchange and acetyltransferase complex

Li, C., Smirnova, E., Schnitzler, C., Crucifix, C., Concordet, J.P., Brion, A., Poterszman, A., Schultz, P., Papai, G., Ben-Shem, A.

(2024) Nature 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 13-mer - A3B3C2D1E1F1G1H1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 13-mer - A6B3C1D1E1F1 Local Symmetry: Cyclic - C3  (Explore in 3D)
Local Stoichiometry: Hetero 6-mer - A3B3 

Local Symmetry: Cyclic - C3  (Explore in 3D)
Local Stoichiometry: Hetero 6-mer - A3B3 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 966.84 kDa 
• Atom Count: 39,353 
• Modelled Residue Count: 5,031 
• Deposited Residue Count: 8,762 
• Unique protein chains: 8

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E1A-binding protein p400	A	3,159	Homo sapiens	Mutation(s): 0  EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L91 (Homo sapiens) Explore Q96L91  Go to UniProtKB:  Q96L91
PHAROS:  Q96L91 GTEx:  ENSG00000183495

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Enhancer of polycomb homolog 1	B [auth C]	836	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H2F5 (Homo sapiens) Explore Q9H2F5  Go to UniProtKB:  Q9H2F5
PHAROS:  Q9H2F5 GTEx:  ENSG00000120616

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA methyltransferase 1-associated protein 1	C [auth F]	467	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NPF5 (Homo sapiens) Explore Q9NPF5  Go to UniProtKB:  Q9NPF5
PHAROS:  Q9NPF5 GTEx:  ENSG00000178028

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Vacuolar protein sorting-associated protein 72 homolog	D [auth S]	364	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q15906 (Homo sapiens) Explore Q15906  Go to UniProtKB:  Q15906
PHAROS:  Q15906 GTEx:  ENSG00000163159

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Actin, cytoplasmic 1, N-terminally processed	E [auth B], F [auth G]	375	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P60709 (Homo sapiens) Explore P60709  Go to UniProtKB:  P60709
PHAROS:  P60709 GTEx:  ENSG00000075624

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Actin-like protein 6A	G [auth K]	429	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O96019 (Homo sapiens) Explore O96019  Go to UniProtKB:  O96019
PHAROS:  O96019 GTEx:  ENSG00000136518

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
RuvB-like 1	H [auth L], J [auth I], L [auth E]	456	Homo sapiens	Mutation(s): 0  EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y265 (Homo sapiens) Explore Q9Y265  Go to UniProtKB:  Q9Y265
PHAROS:  Q9Y265 GTEx:  ENSG00000175792

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
RuvB-like 2	I [auth H], K [auth D], M [auth J]	463	Homo sapiens	Mutation(s): 0  EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y230 (Homo sapiens) Explore Q9Y230  Go to UniProtKB:  Q9Y230
PHAROS:  Q9Y230 GTEx:  ENSG00000183207

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.40 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC
MODEL REFINEMENT	PHENIX
MODEL REFINEMENT	ISOLDE

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-07 
Deposition Author(s): Li, C., Smirnova, E., Schnitzler, C., Crucifix, C., Concordet, J.P., Brion, A., Poterszman, A., Schultz, P., Papai, G., Ben-Shem, A.

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Funding Organization	Location	Grant Number
La ligue contre le cancer	France	--

Revision History  

• Version 1.0: 2024-08-07
  Type: Initial release