8QOY

Capsular polysaccharide synthesis multienzyme of Actinobacillus Pleuropneumoniae serotype 3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.184 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Transition transferases prime bacterial capsule polymerization.

Litschko, C.Di Domenico, V.Schulze, J.Li, S.Ovchinnikova, O.G.Voskuilen, T.Bethe, A.Cifuente, J.O.Marina, A.Budde, I.Mast, T.A.Sulewska, M.Berger, M.Buettner, F.F.R.Lowary, T.L.Whitfield, C.Codee, J.D.C.Schubert, M.Guerin, M.E.Fiebig, T.

(2024) Nat Chem Biol 

  • DOI: https://doi.org/10.1038/s41589-024-01664-8
  • Primary Citation of Related Structures:  
    8QOY

  • PubMed Abstract: 

    Capsules are long-chain carbohydrate polymers that envelop the surfaces of many bacteria, protecting them from host immune responses. Capsule biosynthesis enzymes are potential drug targets and valuable biotechnological tools for generating vaccine antigens. Despite their importance, it remains unknown how structurally variable capsule polymers of Gram-negative pathogens are linked to the conserved glycolipid anchoring these virulence factors to the bacterial membrane. Using Actinobacillus pleuropneumoniae as an example, we demonstrate that CpsA and CpsC generate a poly(glycerol-3-phosphate) linker to connect the glycolipid with capsules containing poly(galactosylglycerol-phosphate) backbones. We reconstruct the entire capsule biosynthesis pathway in A. pleuropneumoniae serotypes 3 and 7, solve the X-ray crystal structure of the capsule polymerase CpsD, identify its tetratricopeptide repeat domain as essential for elongating poly(glycerol-3-phosphate) and show that CpsA and CpsC stimulate CpsD to produce longer polymers. We identify the CpsA and CpsC product as a wall teichoic acid homolog, demonstrating similarity between the biosynthesis of Gram-positive wall teichoic acid and Gram-negative capsules.


  • Organizational Affiliation

    Institute of Clinical Biochemistry, Hannover Medical School, Hannover, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TagF-like capsule polymerase Cps3D1,149Actinobacillus pleuropneumoniaeMutation(s): 0 
Gene Names: cps3D
UniProt
Find proteins for A0A2S0ETM3 (Actinobacillus pleuropneumoniae)
Explore A0A2S0ETM3 
Go to UniProtKB:  A0A2S0ETM3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2S0ETM3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.184 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 207.911α = 90
b = 207.911β = 90
c = 93.659γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Economy and Competitiveness (MINECO)SpainPID2022-138694OB-I00
German Research Foundation (DFG)Germany412824531

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release
  • Version 1.1: 2024-07-10
    Changes: Database references