Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
Cienikova, Z., Novacek, J., Siborova, M., Popelarova, B., Fuzik, T., Benesik, M., Bardy, P., Plevka, P.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Portal protein | A [auth p], B [auth D] | 563 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A0U1WIV9 (Staphylococcus phage 812) Explore A0A0U1WIV9  Go to UniProtKB:  A0A0U1WIV9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0U1WIV9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein | E [auth A], G | 142 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A1YTP2 (Staphylococcus phage 812) Explore A1YTP2  Go to UniProtKB:  A1YTP2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YTP2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Baseplate hub assembly protein | F [auth M] | 278 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A1YTN9 (Staphylococcus phage 812) Explore A1YTN9  Go to UniProtKB:  A1YTN9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YTN9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein | H [auth S] | 292 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A1YTN7 (Staphylococcus phage 812) Explore A1YTN7  Go to UniProtKB:  A1YTN7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YTN7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative neck protein | I [auth b], J [auth c] | 302 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A1YTN6 (Staphylococcus phage 812) Explore A1YTN6  Go to UniProtKB:  A1YTN6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YTN6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Major tail sheath protein | K [auth B], L [auth I], M [auth O] | 587 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A0U1WZ79 (Staphylococcus phage 812) Explore A0A0U1WZ79  Go to UniProtKB:  A0A0U1WZ79 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0U1WZ79 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
Anchor DNA forward strand (120-MER) | C [auth Y] | 120 | Staphylococcus phage 812 | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
Anchor DNA reverse strand (120-MER) | D [auth Z] | 120 | Staphylococcus phage 812 | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | N [auth S], O [auth b], P [auth c] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | RELION | 3.1 |
RECONSTRUCTION | UCSF Chimera | 1.16 |
Funding Organization | Location | Grant Number |
---|---|---|
Ministry of Education, Youth and Sports of the Czech Republic | Czech Republic | -- |