Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
Cienikova, Z., Novacek, J., Siborova, M., Popelarova, B., Fuzik, T., Benesik, M., Bardy, P., Plevka, P.To be published.
Experimental Data Snapshot
Starting Models: in silico
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein | 292 | Staphylococcus phage 812 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A1YTN7 (Staphylococcus phage 812) Explore A1YTN7  Go to UniProtKB:  A1YTN7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YTN7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Baseplate hub assembly protein | B [auth G] | 278 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A1YTN9 (Staphylococcus phage 812) Explore A1YTN9  Go to UniProtKB:  A1YTN9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YTN9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative non-cytoplasmic protein | C [auth N], D [auth n] | 87 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A0U1WZ69 (Staphylococcus phage 812) Explore A0A0U1WZ69  Go to UniProtKB:  A0A0U1WZ69 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0U1WZ69 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Non-cytoplasmic protein | E [auth S], F [auth s] | 152 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A0A0U1WIM1 (Staphylococcus phage 812) Explore A0A0U1WIM1  Go to UniProtKB:  A0A0U1WIM1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0U1WIM1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative neck protein | G [auth a], H [auth b] | 302 | Staphylococcus phage 812 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A1YTN6 (Staphylococcus phage 812) Explore A1YTN6  Go to UniProtKB:  A1YTN6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YTN6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | I [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.19 |
MODEL REFINEMENT | ISOLDE | 1.4 |
RECONSTRUCTION | RELION | 3.1 |
Funding Organization | Location | Grant Number |
---|---|---|
Ministry of Education, Youth and Sports of the Czech Republic | Czech Republic | -- |