8QD0

Cryo-EM structure of the inward-facing choline-bound FLVCR2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Molecular mechanism of choline and ethanolamine transport in humans.

Ri, K.Weng, T.H.Claveras Cabezudo, A.Josting, W.Zhang, Y.Bazzone, A.Leong, N.C.P.Welsch, S.Doty, R.T.Gursu, G.Lim, T.J.Y.Schmidt, S.L.Abkowitz, J.L.Hummer, G.Wu, D.Nguyen, L.N.Safarian, S.

(2024) Nature 630: 501-508

  • DOI: https://doi.org/10.1038/s41586-024-07444-7
  • Primary Citation of Related Structures:  
    8QCS, 8QCT, 8QCX, 8QCY, 8QD0, 8R8T

  • PubMed Abstract: 

    Human feline leukaemia virus subgroup C receptor-related proteins 1 and 2 (FLVCR1 and FLVCR2) are members of the major facilitator superfamily 1 . Their dysfunction is linked to several clinical disorders, including PCARP, HSAN and Fowler syndrome 2-7 . Earlier studies concluded that FLVCR1 may function as a haem exporter 8-12 , whereas FLVCR2 was suggested to act as a haem importer 13 , yet conclusive biochemical and detailed molecular evidence remained elusive for the function of both transporters 14-16 . Here, we show that FLVCR1 and FLVCR2 facilitate the transport of choline and ethanolamine across the plasma membrane, using a concentration-driven substrate translocation process. Through structural and computational analyses, we have identified distinct conformational states of FLVCRs and unravelled the coordination chemistry underlying their substrate interactions. Fully conserved tryptophan and tyrosine residues form the binding pocket of both transporters and confer selectivity for choline and ethanolamine through cation-π interactions. Our findings clarify the mechanisms of choline and ethanolamine transport by FLVCR1 and FLVCR2, enhance our comprehension of disease-associated mutations that interfere with these vital processes and shed light on the conformational dynamics of these major facilitator superfamily proteins during the transport cycle.


  • Organizational Affiliation

    Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Heme transporter FLVCR2534Homo sapiensMutation(s): 0 
Gene Names: FLVCR2C14orf58
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UPI3 (Homo sapiens)
Explore Q9UPI3 
Go to UniProtKB:  Q9UPI3
PHAROS:  Q9UPI3
GTEx:  ENSG00000119686 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UPI3
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CHT (Subject of Investigation/LOI)
Query on CHT

Download Ideal Coordinates CCD File 
B [auth A]CHOLINE ION
C5 H14 N O
OEYIOHPDSNJKLS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTPHENIX1.18

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-17
    Type: Initial release
  • Version 1.1: 2024-05-22
    Changes: Database references
  • Version 1.2: 2024-06-05
    Changes: Database references
  • Version 1.3: 2024-06-19
    Changes: Database references