Download MendeleyStructural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Nurullina, L., Terrosu, S., Jenner, L., Myasnikov, A., Yusupov, M.To be published.
8Q7Z
Structure of the G. gallus 80S non-rotated ribosome
- PDB DOI: https://doi.org/10.2210/pdb8Q7Z/pdb
- EM Map EMD-18168: EMDB EMDataResource
- NAKB: 8Q7Z
- Classification: RIBOSOME
- Organism(s): Gallus gallus
- Mutation(s): No
- Deposited: 2023-08-17 Released: 2024-08-28
- Funding Organization(s): Fondation pour la Recherche Medicale (FRM)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.50 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L41 | D [auth Az] | 25 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A087WNH4 (Oryctolagus cuniculus) Explore A0A087WNH4 Go to UniProtKB: A0A087WNH4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A087WNH4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L8 | E [auth BA] | 257 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NIX0 (Gallus gallus) Explore F1NIX0 Go to UniProtKB: F1NIX0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1NIX0 | ||||
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Entity ID: 6 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL3 | F [auth BB] | 403 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZJZ2 (Gallus gallus) Explore Q5ZJZ2 Go to UniProtKB: Q5ZJZ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZJZ2 | ||||
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Entity ID: 7 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L4 C-terminal domain-containing protein | G [auth BC] | 421 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZII1 (Gallus gallus) Explore Q5ZII1 Go to UniProtKB: Q5ZII1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZII1 | ||||
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Entity ID: 8 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL18 | H [auth BD] | 297 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P22451 (Gallus gallus) Explore P22451 Go to UniProtKB: P22451 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22451 | ||||
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Entity ID: 9 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L6 | I [auth BE] | 298 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q8UWG7 (Gallus gallus) Explore Q8UWG7 Go to UniProtKB: Q8UWG7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8UWG7 | ||||
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Entity ID: 10 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL30 | J [auth BF] | 246 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZJ56 (Gallus gallus) Explore Q5ZJ56 Go to UniProtKB: Q5ZJ56 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZJ56 | ||||
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Entity ID: 11 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL8 | K [auth BG] | 266 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P32429 (Gallus gallus) Explore P32429 Go to UniProtKB: P32429 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P32429 | ||||
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Entity ID: 12 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L9 | L [auth BH] | 192 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1D5NVI1 (Gallus gallus) Explore A0A1D5NVI1 Go to UniProtKB: A0A1D5NVI1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1D5NVI1 | ||||
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Entity ID: 13 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL16,Large ribosomal subunit protein uL16,Large ribosomal subunit protein uL16 | M [auth BI] | 214 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q08200 (Gallus gallus) Explore Q08200 Go to UniProtKB: Q08200 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q08200 | ||||
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Entity ID: 14 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L11 | N [auth BJ] | 178 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1D5P3B1 (Gallus gallus) Explore A0A1D5P3B1 Go to UniProtKB: A0A1D5P3B1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1D5P3B1 | ||||
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Entity ID: 15 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL13 | O [auth BL] | 211 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P41125 (Gallus gallus) Explore P41125 Go to UniProtKB: P41125 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P41125 | ||||
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Entity ID: 16 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L14 | P [auth BM] | 131 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF9 (Gallus gallus) Explore Q98TF9 Go to UniProtKB: Q98TF9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF9 | ||||
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Entity ID: 17 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L15 | Q [auth BN] | 204 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NQG5 (Gallus gallus) Explore F1NQG5 Go to UniProtKB: F1NQG5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1NQG5 | ||||
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Entity ID: 18 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL13 | R [auth BO] | 203 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 19 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L17 | S [auth BP] | 184 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1D5PR40 (Gallus gallus) Explore A0A1D5PR40 Go to UniProtKB: A0A1D5PR40 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1D5PR40 | ||||
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Entity ID: 20 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eL18,Ribosomal protein L18,Ribosomal protein L18 | T [auth BQ] | 187 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q6EE60 (Gallus gallus) Explore Q6EE60 Go to UniProtKB: Q6EE60 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6EE60 | ||||
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Entity ID: 21 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L19 | U [auth BR] | 196 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZKK8 (Gallus gallus) Explore Q5ZKK8 Go to UniProtKB: Q5ZKK8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZKK8 | ||||
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Entity ID: 22 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eL20,60S ribosomal protein L18a,60S ribosomal protein L18a | V [auth BS] | 176 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NPD3 (Gallus gallus) Explore F1NPD3 Go to UniProtKB: F1NPD3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1NPD3 | ||||
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Entity ID: 23 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L21 | W [auth BT] | 160 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for R4GIQ2 (Gallus gallus) Explore R4GIQ2 Go to UniProtKB: R4GIQ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | R4GIQ2 | ||||
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Entity ID: 24 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL22 | X [auth BU] | 128 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF8 (Gallus gallus) Explore Q98TF8 Go to UniProtKB: Q98TF8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF8 | ||||
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Entity ID: 25 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L23,60S ribosomal protein L23,Ribosomal protei uL14 | Y [auth BV] | 140 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0ZNU5 (Gallus gallus) Explore A0A8V0ZNU5 Go to UniProtKB: A0A8V0ZNU5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8V0ZNU5 | ||||
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Entity ID: 26 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L24 | Z [auth BW] | 157 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0XRE7 (Gallus gallus) Explore A0A8V0XRE7 Go to UniProtKB: A0A8V0XRE7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8V0XRE7 | ||||
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Entity ID: 27 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL23 | AA [auth BX] | 155 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
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Entity ID: 28 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L26 like 1 | BA [auth BY] | 145 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F2Z4K6 (Gallus gallus) Explore F2Z4K6 Go to UniProtKB: F2Z4K6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F2Z4K6 | ||||
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Entity ID: 29 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL27 | CA [auth BZ] | 136 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P61355 (Gallus gallus) Explore P61355 Go to UniProtKB: P61355 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61355 | ||||
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Entity ID: 30 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein uL15 | DA [auth Ba] | 148 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
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Entity ID: 31 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L29 | EA [auth Bb] | 71 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1L1RNZ2 (Gallus gallus) Explore A0A1L1RNZ2 Go to UniProtKB: A0A1L1RNZ2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1L1RNZ2 | ||||
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Entity ID: 32 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL30 | FA [auth Bc] | 115 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P67883 (Gallus gallus) Explore P67883 Go to UniProtKB: P67883 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P67883 | ||||
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Entity ID: 33 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L31 | GA [auth Bd] | 176 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1L1RT94 (Gallus gallus) Explore A0A1L1RT94 Go to UniProtKB: A0A1L1RT94 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1L1RT94 | ||||
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Entity ID: 34 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L32 | HA [auth Be] | 135 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1BVB1 (Gallus gallus) Explore E1BVB1 Go to UniProtKB: E1BVB1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E1BVB1 | ||||
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Entity ID: 35 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L35a | IA [auth Bf] | 110 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0YS49 (Gallus gallus) Explore A0A8V0YS49 Go to UniProtKB: A0A8V0YS49 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8V0YS49 | ||||
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Entity ID: 36 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L34 | JA [auth Bg] | 117 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A1L1S0X5 (Gallus gallus) Explore A0A1L1S0X5 Go to UniProtKB: A0A1L1S0X5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1L1S0X5 | ||||
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Entity ID: 37 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein uL29 | KA [auth Bh] | 123 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF7 (Gallus gallus) Explore Q98TF7 Go to UniProtKB: Q98TF7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF7 | ||||
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Entity ID: 38 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL36 | LA [auth Bi] | 105 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF6 (Gallus gallus) Explore Q98TF6 Go to UniProtKB: Q98TF6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF6 | ||||
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Entity ID: 39 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L37 | MA [auth Bj] | 97 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1C810 (Gallus gallus) Explore E1C810 Go to UniProtKB: E1C810 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E1C810 | ||||
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Entity ID: 40 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L38 | NA [auth Bk] | 70 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1BU66 (Gallus gallus) Explore E1BU66 Go to UniProtKB: E1BU66 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E1BU66 | ||||
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Entity ID: 41 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL39 | OA [auth Bl] | 51 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TF5 (Gallus gallus) Explore Q98TF5 Go to UniProtKB: Q98TF5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TF5 | ||||
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Entity ID: 42 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin-60S ribosomal protein L40 | PA [auth Bm] | 128 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for O42388 (Gallus gallus) Explore O42388 Go to UniProtKB: O42388 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O42388 | ||||
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Entity ID: 43 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L36a like | QA [auth Bo] | 105 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0YUB1 (Gallus gallus) Explore A0A8V0YUB1 Go to UniProtKB: A0A8V0YUB1 | |||||
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| UniProt Group | A0A8V0YUB1 | ||||
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Entity ID: 44 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Large ribosomal subunit protein eL43 | RA [auth Bp] | 92 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P32046 (Gallus gallus) Explore P32046 Go to UniProtKB: P32046 | |||||
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| UniProt Group | P32046 | ||||
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Entity ID: 45 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 60S ribosomal protein L28 | SA [auth Br] | 138 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5F346 (Gallus gallus) Explore Q5F346 Go to UniProtKB: Q5F346 | |||||
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| UniProt Group | Q5F346 | ||||
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Entity ID: 47 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S3a,40S ribosomal protein S3a,Ribosomal protein eS1 | UA [auth Aa] | 264 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0XXX0 (Gallus gallus) Explore A0A8V0XXX0 Go to UniProtKB: A0A8V0XXX0 | |||||
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| UniProt Group | A0A8V0XXX0 | ||||
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Entity ID: 48 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S27 | VA [auth AA] | 84 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A3Q2TV39 (Gallus gallus) Explore A0A3Q2TV39 Go to UniProtKB: A0A3Q2TV39 | |||||
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| UniProt Group | A0A3Q2TV39 | ||||
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Entity ID: 49 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S28 | WA [auth AB] | 69 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A3Q2U825 (Gallus gallus) Explore A0A3Q2U825 Go to UniProtKB: A0A3Q2U825 | |||||
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| UniProt Group | A0A3Q2U825 | ||||
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Entity ID: 50 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S2 | XA [auth Ab] | 264 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0Z891 (Gallus gallus) Explore A0A8V0Z891 Go to UniProtKB: A0A8V0Z891 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A8V0Z891 | ||||
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Entity ID: 51 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS4 | YA [auth Ad] | 263 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P47836 (Gallus gallus) Explore P47836 Go to UniProtKB: P47836 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P47836 | ||||
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Entity ID: 52 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein eS30 | ZA [auth AD] | 133 | Gallus gallus | Mutation(s): 0 |  |
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Entity ID: 53 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S26 | AB [auth AE] | 115 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZM66 (Gallus gallus) Explore Q5ZM66 Go to UniProtKB: Q5ZM66 | |||||
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| UniProt Group | Q5ZM66 | ||||
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Entity ID: 54 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS6 | BB [auth Af] | 249 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P47838 (Gallus gallus) Explore P47838 Go to UniProtKB: P47838 | |||||
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| UniProt Group | P47838 | ||||
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Entity ID: 55 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S7 | CB [auth Ag] | 194 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NN16 (Gallus gallus) Explore F1NN16 Go to UniProtKB: F1NN16 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F1NN16 | ||||
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Entity ID: 56 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S8 | DB [auth Ah] | 207 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NB02 (Gallus gallus) Explore F1NB02 Go to UniProtKB: F1NB02 | |||||
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| UniProt Group | F1NB02 | ||||
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Entity ID: 57 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S9 | EB [auth Ai] | 194 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for B7NZS8 (Oryctolagus cuniculus) Explore B7NZS8 Go to UniProtKB: B7NZS8 | |||||
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| UniProt Group | B7NZS8 | ||||
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Entity ID: 58 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S11 | FB [auth Ak] | 158 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q98TH5 (Gallus gallus) Explore Q98TH5 Go to UniProtKB: Q98TH5 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q98TH5 | ||||
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Entity ID: 59 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS15 | GB [auth Am] | 151 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q6ITC7 (Gallus gallus) Explore Q6ITC7 Go to UniProtKB: Q6ITC7 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6ITC7 | ||||
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Entity ID: 60 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S14 | HB [auth An] | 151 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q5ZHW8 (Gallus gallus) Explore Q5ZHW8 Go to UniProtKB: Q5ZHW8 | |||||
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| UniProt Group | Q5ZHW8 | ||||
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Entity ID: 61 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S20 | IB [auth At] | 119 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NH93 (Gallus gallus) Explore F1NH93 Go to UniProtKB: F1NH93 | |||||
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| UniProt Group | F1NH93 | ||||
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Entity ID: 62 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S21 | JB [auth Au] | 83 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0ZQ38 (Gallus gallus) Explore A0A8V0ZQ38 Go to UniProtKB: A0A8V0ZQ38 | |||||
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| UniProt Group | A0A8V0ZQ38 | ||||
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Entity ID: 63 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S15a | KB [auth Av] | 130 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A3Q3A7P6 (Gallus gallus) Explore A0A3Q3A7P6 Go to UniProtKB: A0A3Q3A7P6 | |||||
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| UniProt Group | A0A3Q3A7P6 | ||||
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Entity ID: 64 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S23,40S ribosomal protein S23,Ribosomal protein uS12 | LB [auth Aw] | 143 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0XRS9 (Gallus gallus) Explore A0A8V0XRS9 Go to UniProtKB: A0A8V0XRS9 | |||||
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| UniProt Group | A0A8V0XRS9 | ||||
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Entity ID: 65 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S24 | MB [auth Ax] | 131 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for F1NF89 (Gallus gallus) Explore F1NF89 Go to UniProtKB: F1NF89 | |||||
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| UniProt Group | F1NF89 | ||||
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Entity ID: 66 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS2 | NB [auth AZ] | 296 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P50890 (Gallus gallus) Explore P50890 Go to UniProtKB: P50890 | |||||
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| UniProt Group | P50890 | ||||
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Entity ID: 67 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S16 | OB [auth Ap] | 146 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for R4GGJ0 (Gallus gallus) Explore R4GGJ0 Go to UniProtKB: R4GGJ0 | |||||
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| UniProt Group | R4GGJ0 | ||||
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Entity ID: 68 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin | PB [auth AC] | 156 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P79781 (Gallus gallus) Explore P79781 Go to UniProtKB: P79781 | |||||
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| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P79781 | ||||
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Entity ID: 69 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S5 | QB [auth Ae] | 204 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for G1TFM5 (Oryctolagus cuniculus) Explore G1TFM5 Go to UniProtKB: G1TFM5 | |||||
Entity Groups | |||||
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| UniProt Group | G1TFM5 | ||||
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Entity ID: 70 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein RACK1 | RB [auth AF] | 317 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P63247 (Gallus gallus) Explore P63247 Go to UniProtKB: P63247 | |||||
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| UniProt Group | P63247 | ||||
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Entity ID: 71 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S29 | SB [auth AG] | 171 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V0Z8V3 (Gallus gallus) Explore A0A8V0Z8V3 Go to UniProtKB: A0A8V0Z8V3 | |||||
Entity Groups | |||||
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| UniProt Group | A0A8V0Z8V3 | ||||
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Entity ID: 72 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein S10 | TB [auth Aj] | 165 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for E1C4N0 (Gallus gallus) Explore E1C4N0 Go to UniProtKB: E1C4N0 | |||||
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| UniProt Group | E1C4N0 | ||||
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Entity ID: 73 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS12 | UB [auth Al] | 132 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P84175 (Gallus gallus) Explore P84175 Go to UniProtKB: P84175 | |||||
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| UniProt Group | P84175 | ||||
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Entity ID: 74 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein uS19 | VB [auth Ao] | 145 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P62846 (Gallus gallus) Explore P62846 Go to UniProtKB: P62846 | |||||
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| UniProt Group | P62846 | ||||
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Entity ID: 75 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S18 | WB [auth Ar] | 152 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for G1TPG3 (Oryctolagus cuniculus) Explore G1TPG3 Go to UniProtKB: G1TPG3 | |||||
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| UniProt Group | G1TPG3 | ||||
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Entity ID: 76 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S19 | XB [auth As] | 145 | Gallus gallus | Mutation(s): 0 |  |
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Entity ID: 77 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 40S ribosomal protein S25 | YB [auth Ay] | 125 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A8V1A7V4 (Gallus gallus) Explore A0A8V1A7V4 Go to UniProtKB: A0A8V1A7V4 | |||||
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| UniProt Group | A0A8V1A7V4 | ||||
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Entity ID: 78 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DNA-(apurinic or apyrimidinic site) lyase | ZB [auth Ac] | 243 | Gallus gallus | Mutation(s): 0 EC: 4.2.99.18 |  |
UniProt | |||||
Find proteins for F1NPA9 (Gallus gallus) Explore F1NPA9 Go to UniProtKB: F1NPA9 | |||||
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| UniProt Group | F1NPA9 | ||||
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Entity ID: 80 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Small ribosomal subunit protein eS17 | BC [auth Aq] | 135 | Gallus gallus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P08636 (Gallus gallus) Explore P08636 Go to UniProtKB: P08636 | |||||
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| UniProt Group | P08636 | ||||
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Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 28S rRNA | A [auth B5] | 4,441 | Gallus gallus |  | |
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Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5.8S rRNA | B [auth B8] | 157 | Gallus gallus |  | |
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Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 5S rRNA | C [auth B7] | 119 | Gallus gallus |  | |
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Entity ID: 46 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 18S rRNA | TA [auth A2] | 1,823 | Gallus gallus |  | |
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Entity ID: 79 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Phe tRNA | AC [auth V] | 76 | Gallus gallus |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | AR [auth Bo] BR [auth Bp] CV [auth AE] HV [auth AG] VQ [auth Bg] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| MG Query on MG | AD [auth B5] AE [auth B5] AF [auth B5] AG [auth B5] AH [auth B5] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| HIC Query on HIC | F [auth BB] | L-PEPTIDE LINKING | C7 H11 N3 O2 |  | HIS |
| MLZ Query on MLZ | QA [auth Bo] | L-PEPTIDE LINKING | C7 H16 N2 O2 |  | LYS |
| SAC Query on SAC | NB [auth AZ] | L-PEPTIDE LINKING | C5 H9 N O4 |  | SER |
| NMM Query on NMM | XB [auth As] | L-PEPTIDE LINKING | C7 H16 N4 O2 |  | ARG |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.50 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.19rc4_4035: |
| RECONSTRUCTION | cryoSPARC |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-08-28 Deposition Author(s): Nurullina, L., Jenner, L., Yusupov, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Fondation pour la Recherche Medicale (FRM) | France | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-08-28
Type: Initial release
