Download MendeleyGenome anchoring, retention, and release by neck proteins of Herelleviridae phage 812
Cienikova, Z., Novacek, J., Siborova, M., Popelarova, B., Fuzik, T., Benesik, M., Bardy, P., Plevka, P.To be published.
8Q7D
Neck of phage 812 after tail contraction (C12)
- PDB DOI: https://doi.org/10.2210/pdb8Q7D/pdb
- EM Map EMD-18213: EMDB EMDataResource
- NAKB: 8Q7D
- Classification: VIRUS
- Organism(s): Staphylococcus phage 812
- Mutation(s): No
- Deposited: 2023-08-16 Released: 2024-08-28
- Funding Organization(s): Ministry of Education, Youth and Sports of the Czech Republic
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.07 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Starting Model: in silico
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative neck protein | A [auth d] | 302 | Staphylococcus phage 812 | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A1YTN6 (Staphylococcus phage 812) Explore A1YTN6 Go to UniProtKB: A1YTN6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A1YTN6 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Portal protein | B [auth p] | 563 | Staphylococcus phage 812 | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A0A0U1WIV9 (Staphylococcus phage 812) Explore A0A0U1WIV9 Go to UniProtKB: A0A0U1WIV9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0U1WIV9 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA forward strand (120-MER) | C [auth Y] | 120 | Staphylococcus phage 812 |  | |
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA reverse strand (120-MER) | D [auth Z] | 120 | Staphylococcus phage 812 |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | E [auth d] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.07 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | PHENIX | 1.19 |
| MODEL REFINEMENT | ISOLDE | 1.4 |
| RECONSTRUCTION | RELION | 3.1 |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-08-28 Deposition Author(s): Cienikova, Z., Siborova, M., Fuzik, T., Plevka, P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Education, Youth and Sports of the Czech Republic | Czech Republic | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-08-28
Type: Initial release
