Structural basis for spacer acquisition in a type II-A CRISPR-Cas system
Sasnauskas, G., Gaizauskaite, U., Tamulaitiene, G.To be published.
Experimental Data Snapshot
Starting Model: in silico
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CRISPR-associated endoribonuclease Cas2 | 114 | Streptococcus thermophilus DGCC 7710 | Mutation(s): 0  Gene Names: cas2 EC: 3.1 | ![]() | |
UniProt | |||||
Find proteins for G3ECR3 (Streptococcus thermophilus) Explore G3ECR3  Go to UniProtKB:  G3ECR3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G3ECR3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CRISPR-associated endonuclease Cas1 | 302 | Streptococcus thermophilus DGCC 7710 | Mutation(s): 0  Gene Names: cas1 EC: 3.1 | ![]() | |
UniProt | |||||
Find proteins for G3ECR2 (Streptococcus thermophilus) Explore G3ECR2  Go to UniProtKB:  G3ECR2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G3ECR2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
Prespacer DNA, chain G | 26 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
Prespacer DNA, chain H | 26 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Length | Organism | Image | |
Integration target, chain I | 48 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Length | Organism | Image | |
Integration target, chain J | 48 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | K [auth A], L [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | cryoSPARC | 4.2.1+230427 |
MODEL REFINEMENT | PHENIX | 1.21rc1_4903 |
Funding Organization | Location | Grant Number |
---|---|---|
Research Council of Lithuania | Lithuania | S-MIP-19-32 |