8PN0

HEV gt3 P domain in complex with glycan-sensitive nAb p60.12

• PDB DOI: https://doi.org/10.2210/pdb8PN0/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Homo sapiens, Paslahepevirus balayani
• Expression System: Drosophila melanogaster
• Mutation(s): No 


• Deposited: 2023-06-29 Released: 2024-07-10 
• Deposition Author(s): Ssebyatika, G., Krey, T.
• Funding Organization(s): Volkswagen Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.07 Å
• R-Value Free: 0.261 
• R-Value Work: 0.226 
• R-Value Observed: 0.228 

Starting Model: experimental

Literature

A novel class of broadly neutralizing hepatitis E virus-specific human antibodies

Ssebyatika, G., Dinkelborg, K., Stroeh, L.J., Hinte, F., Corneillie, L., Hueffner, L., Guzman, E.M., Nankya, P.L., Plueckebaum, N., Prallet, S., Mehnert, A.K., Verhoye, L., Juergens, C., Steinmann, E., Wedemeyer, H., Viejo-Borbolla, A., Dao Thi, L.V., Pietschmann, T., Luetgehetmann, M., Meuleman, P., Dandri, M., Krey, T., Behrendt, P.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 8-mer - A4B2C2 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 8-mer - A4B3C1 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content

• Total Structure Weight: 187 kDa 
• Atom Count: 11,149 
• Modelled Residue Count: 1,461 
• Deposited Residue Count: 1,744 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab_p60.12-HC	A, G [auth H]	233	Homo sapiens	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab_p60.12-LC	B, H [auth L]	217	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	C, D, E, F	211	Paslahepevirus balayani	Mutation(s): 0
UniProt
Find proteins for A0A6C0PR31 (Hepatitis E virus) Explore A0A6C0PR31  Go to UniProtKB:  A0A6C0PR31

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.07 Å
• R-Value Free: 0.261 
• R-Value Work: 0.226 
• R-Value Observed: 0.228 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.43	α = 90
b = 94.48	β = 90.21
c = 91.25	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
XDS	data reduction
pointless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-10 
Deposition Author(s): Ssebyatika, G., Krey, T.

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Funding Organization	Location	Grant Number
Volkswagen Foundation	Germany	9A888

Revision History  

• Version 1.0: 2024-07-10
  Type: Initial release