8KIE

Structure of YchF with 50S ribosomal subunit (local map)

  • Classification: RIBOSOME
  • Organism(s): Escherichia coli
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2023-08-23 Released: 2024-08-28 
  • Deposition Author(s): Yu, T., Li, X., Zeng, F.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC), Guangdong Basic and Applied Basic Research Foundation, Shenzhen Science and Technology Program

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structure basis of translation regulation by YchF bound to ribosome

Li, X., Yu, T., Li, Q., Zeng, F.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosome-binding ATPase YchFA [auth y]379Escherichia coliMutation(s): 1 
Gene Names: ychF
UniProt
Find proteins for P0ABU2 (Escherichia coli (strain K12))
Explore P0ABU2 
Go to UniProtKB:  P0ABU2
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UniProt GroupP0ABU2
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14C [auth j]123Escherichia coliMutation(s): 0 
UniProt
Find proteins for P0ADY3 (Escherichia coli (strain K12))
Explore P0ADY3 
Go to UniProtKB:  P0ADY3
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UniProt GroupP0ADY3
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19D [auth o]115Escherichia coliMutation(s): 0 
UniProt
Find proteins for P0A7K6 (Escherichia coli (strain K12))
Explore P0A7K6 
Go to UniProtKB:  P0A7K6
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UniProt GroupP0A7K6
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  • Reference Sequence
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Entity ID: 2
MoleculeChains LengthOrganismImage
23S rRNA (partial)B [auth a]2,904Escherichia coli
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG
Download Ideal Coordinates CCD File 
AA [auth a]
BA [auth a]
CA [auth a]
DA [auth a]
E [auth a]
AA [auth a],
BA [auth a],
CA [auth a],
DA [auth a],
E [auth a],
EA [auth a],
F [auth a],
FA [auth a],
G [auth a],
GA [auth a],
H [auth a],
HA [auth a],
I [auth a],
J [auth a],
K [auth a],
L [auth a],
M [auth a],
N [auth a],
O [auth a],
P [auth a],
Q [auth a],
R [auth a],
S [auth a],
T [auth a],
U [auth a],
V [auth a],
W [auth a],
X [auth a],
Y [auth a],
Z [auth a]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32171200
Guangdong Basic and Applied Basic Research FoundationChina2021A1515010805
Shenzhen Science and Technology ProgramChinaJCYJ20220530115210023

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-28
    Type: Initial release