Annotations: 8KIE

Structure of YchF with 50S ribosomal subunit (local map)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth j]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8103358	3000433	SCOP2B (2022-06-29)
D [auth o]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8096364	3000334	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth y]	fn3	e8kiey01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth y]	Ribosome-binding ATPase YchF	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity ribonucleoprotein complex binding protein-containing complex binding ribosomal large subunit binding ribosome binding enzyme regulator activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity guanyl nucleotide binding GTP binding guanyl ribonucleotide binding cation binding metal ion binding	response to oxidative stress response to stimulus response to stress	cellular anatomical structure intracellular anatomical structure cytoplasm
B [auth a]	23S rRNA (partial)	-	-	-
C [auth j]	50S ribosomal protein L14	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
D [auth o]	50S ribosomal protein L19	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth y]	IPR031167	OBG-type guanine nucleotide-binding (G) domain	Domain
A [auth y]	IPR012676	TGS-like	Homologous Superfamily
A [auth y]	IPR004095	TGS	Domain
A [auth y]	IPR004396	Ribosome-binding ATPase YchF/Obg-like ATPase 1	Family
A [auth y]	IPR023192	TGS-like domain superfamily	Homologous Superfamily
A [auth y]	IPR013029	YchF, C-terminal domain	Domain
A [auth y]	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
A [auth y]	IPR006073	GTP binding domain	Domain
A [auth y]	IPR041706	YchF, N-terminal	Domain
A [auth y]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C [auth j]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
C [auth j]	IPR000218	Large ribosomal subunit protein uL14	Family
C [auth j]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
C [auth j]	IPR005745	Large ribosomal subunit protein uL14, bacteria	Family
D [auth o]	IPR001857	Large ribosomal subunit protein bL19	Family
D [auth o]	IPR038657	Large ribosomal subunit protein bL19 superfamily	Homologous Superfamily
D [auth o]	IPR018257	Large ribosomal subunit protein bL19, conserved site	Conserved Site
D [auth o]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8KIE | pdb_00008kie

Structure of YchF with 50S ribosomal subunit (local map)

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage