Structure of csy complex with long DNA State2
Zhang, L.X., Feng, Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HD Cas3-type domain-containing protein | A [auth a], DA [auth A] | 930 | Vibrio phage ICP1_2004_A | Mutation(s): 0  Gene Names: TUST1-10_00455 | ![]() |
UniProt | |||||
Find proteins for F1D5V9 (Vibrio phage ICP1_2004_A) Explore F1D5V9  Go to UniProtKB:  F1D5V9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1D5V9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Csy1 | B [auth b], P [auth B] | 179 | Vibrio phage ICP1_2004_A | Mutation(s): 0  Gene Names: TUST1-10_00450 | ![]() |
UniProt | |||||
Find proteins for F1D5V8 (Vibrio phage ICP1_2004_A) Explore F1D5V8  Go to UniProtKB:  F1D5V8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1D5V8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Csy2 | C [auth c], Q [auth C] | 248 | Vibrio phage ICP1_2004_A | Mutation(s): 0  Gene Names: TUST1-10_00445 | ![]() |
UniProt | |||||
Find proteins for F1D5V7 (Vibrio phage ICP1_2004_A) Explore F1D5V7  Go to UniProtKB:  F1D5V7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1D5V7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cas1 | D [auth d], E [auth e], R [auth D], S [auth E] | 302 | Vibrio phage ICP1_2004_A | Mutation(s): 0  Gene Names: TUST1-10_00460 | ![]() |
UniProt | |||||
Find proteins for F1D5W0 (Vibrio phage ICP1_2004_A) Explore F1D5W0  Go to UniProtKB:  F1D5W0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1D5W0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Csy3 | 306 | Vibrio phage ICP1_2004_A | Mutation(s): 0  Gene Names: TUST1-10_00440 | ![]() | |
UniProt | |||||
Find proteins for F1D5V6 (Vibrio phage ICP1_2004_A) Explore F1D5V6  Go to UniProtKB:  F1D5V6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1D5V6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Csy4 | G [auth h], U [auth H] | 168 | Vibrio phage ICP1_2004_A | Mutation(s): 0  Gene Names: TUST1-10_00435 | ![]() |
UniProt | |||||
Find proteins for F1D5V5 (Vibrio phage ICP1_2004_A) Explore F1D5V5  Go to UniProtKB:  F1D5V5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F1D5V5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (60-MER) | AA [auth P], M [auth p] | 60 | Vibrio phage ICP1_2004_A | ![]() | |
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (43-MER) | BA [auth Q], EA [auth U], N [auth q] | 43 | Vibrio phage ICP1_2004_A | ![]() | |
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (31-MER) | CA [auth R], O [auth r] | 31 | Vibrio phage ICP1_2004_A | ![]() | |
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 10 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*AP*TP*CP*TP*TP*CP*CP*CP*TP*AP*TP*TP*TP*AP*AP*AP*TP*TP*GP*CP*T)-3') | FA [auth V] | 21 | Vibrio phage ICP1_2004_A | ![]() | |
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MN (Subject of Investigation/LOI) Query on MN | GA [auth a], HA [auth a], IA [auth A], JA [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
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National Science Foundation (NSF, China) | China | 32171274 |