8JIB

Crystal Structure of Prophenoloxidase PPO6 from Aedes aegypti

PDB DOI: https://doi.org/10.2210/pdb8JIB/pdb

Classification: IMMUNE SYSTEM
Organism(s): Aedes aegypti
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-05-26 Released: 2023-11-29
Deposition Author(s): Zhu, X., Zhang, L., Yang, X., Bao, P., Ren, D., Han, Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.15 Å
R-Value Free: 0.310
R-Value Work: 0.269
R-Value Observed: 0.271

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Mosquitoes have evolved two types of prophenoloxidases

Zhu, X., Zhang, L., Chen, H., Tang, Y., Jiang, L., Ding, H., Yang, X., Bao, P., Liao, C., Li, J., Ren, D., Vavricka, C.J., Strand, M.R., Han, Q.

To be published.

Macromolecule Content

Total Structure Weight: 956.36 kDa
Atom Count: 65,153
Modelled Residue Count: 7,870
Deposited Residue Count: 8,172
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TK receptor	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	681	Aedes aegypti	Mutation(s): 0 Gene Names: 5564622
UniProt
Find proteins for Q16G28 (Aedes aegypti) Explore Q16G28 Go to UniProtKB: Q16G28
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q16G28
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CU (Subject of Investigation/LOI) Query on CU Download Ideal Coordinates CCD File SDF format, chain BA [auth F] SDF format, chain FA [auth G] SDF format, chain MA [auth J] SDF format, chain N [auth A] SDF format, chain R [auth B] SDF format, chain AA [auth E] SDF format, chain CA [auth F] SDF format, chain EA [auth G] SDF format, chain GA [auth H] SDF format, chain HA [auth H] SDF format, chain JA [auth I] SDF format, chain KA [auth I] SDF format, chain LA [auth J] SDF format, chain M [auth A] SDF format, chain NA [auth K] SDF format, chain OA [auth K] SDF format, chain PA [auth L] SDF format, chain QA [auth L] SDF format, chain S [auth B] SDF format, chain T [auth C] SDF format, chain U [auth C] SDF format, chain V [auth D] SDF format, chain W [auth D] SDF format, chain Z [auth E] MOL2 format, chain BA [auth F] MOL2 format, chain FA [auth G] MOL2 format, chain MA [auth J] MOL2 format, chain N [auth A] MOL2 format, chain R [auth B] MOL2 format, chain AA [auth E] MOL2 format, chain CA [auth F] MOL2 format, chain EA [auth G] MOL2 format, chain GA [auth H] MOL2 format, chain HA [auth H] MOL2 format, chain JA [auth I] MOL2 format, chain KA [auth I] MOL2 format, chain LA [auth J] MOL2 format, chain M [auth A] MOL2 format, chain NA [auth K] MOL2 format, chain OA [auth K] MOL2 format, chain PA [auth L] MOL2 format, chain QA [auth L] MOL2 format, chain S [auth B] MOL2 format, chain T [auth C] MOL2 format, chain U [auth C] MOL2 format, chain V [auth D] MOL2 format, chain W [auth D] MOL2 format, chain Z [auth E]	AA [auth E] BA [auth F] CA [auth F] EA [auth G] FA [auth G] AA [auth E], BA [auth F], CA [auth F], EA [auth G], FA [auth G], GA [auth H], HA [auth H], JA [auth I], KA [auth I], LA [auth J], M [auth A], MA [auth J], N [auth A], NA [auth K], OA [auth K], PA [auth L], QA [auth L], R [auth B], S [auth B], T [auth C], U [auth C], V [auth D], W [auth D], Z [auth E]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N		Interactions Focus chain AA [auth E] Focus chain BA [auth F] Focus chain CA [auth F] Focus chain EA [auth G] Focus chain FA [auth G] Focus chain GA [auth H] Focus chain HA [auth H] Focus chain JA [auth I] Focus chain KA [auth I] Focus chain LA [auth J] Focus chain M [auth A] Focus chain MA [auth J] Focus chain N [auth A] Focus chain NA [auth K] Focus chain OA [auth K] Focus chain PA [auth L] Focus chain QA [auth L] Focus chain R [auth B] Focus chain S [auth B] Focus chain T [auth C] Focus chain U [auth C] Focus chain V [auth D] Focus chain W [auth D] Focus chain Z [auth E] Interactions & Density Focus chain AA [auth E] Focus chain BA [auth F] Focus chain CA [auth F] Focus chain EA [auth G] Focus chain FA [auth G] Focus chain GA [auth H] Focus chain HA [auth H] Focus chain JA [auth I] Focus chain KA [auth I] Focus chain LA [auth J] Focus chain M [auth A] Focus chain MA [auth J] Focus chain N [auth A] Focus chain NA [auth K] Focus chain OA [auth K] Focus chain PA [auth L] Focus chain QA [auth L] Focus chain R [auth B] Focus chain S [auth B] Focus chain T [auth C] Focus chain U [auth C] Focus chain V [auth D] Focus chain W [auth D] Focus chain Z [auth E]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain DA [auth F] SDF format, chain IA [auth H] SDF format, chain O [auth A] SDF format, chain P [auth A] SDF format, chain Q [auth A] SDF format, chain X [auth D] SDF format, chain Y [auth D] MOL2 format, chain DA [auth F] MOL2 format, chain IA [auth H] MOL2 format, chain O [auth A] MOL2 format, chain P [auth A] MOL2 format, chain Q [auth A] MOL2 format, chain X [auth D] MOL2 format, chain Y [auth D]	DA [auth F] IA [auth H] O [auth A] P [auth A] Q [auth A] DA [auth F], IA [auth H], O [auth A], P [auth A], Q [auth A], X [auth D], Y [auth D]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain DA [auth F] Focus chain IA [auth H] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain X [auth D] Focus chain Y [auth D] Interactions & Density Focus chain DA [auth F] Focus chain IA [auth H] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain X [auth D] Focus chain Y [auth D]