8JIB | pdb_00008jib

Crystal Structure of Prophenoloxidase PPO6 from Aedes aegypti


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 
    0.310 (Depositor), 0.308 (DCC) 
  • R-Value Work: 
    0.269 (Depositor), 0.269 (DCC) 
  • R-Value Observed: 
    0.271 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

The Aedes aegypti mosquito evolves two types of prophenoloxidases with diversified functions.

Zhu, X.Zhang, L.Jiang, L.Chen, H.Tang, Y.Yang, X.Bao, P.Liao, C.Li, J.Vavricka, C.J.Ren, D.Chen, Z.Guo, Y.Han, Q.

(2025) Proc Natl Acad Sci U S A 122: e2413131122-e2413131122

  • DOI: https://doi.org/10.1073/pnas.2413131122
  • Primary Citation Related Structures: 
    8JI8, 8JIB

  • PubMed Abstract: 

    Insect phenoloxidase, presented as an inactive precursor prophenoloxidase (PPO) in hemolymph, catalyzes melanin formation, which is involved in wound healing, pathogen killing, reversible oxygen collection during insect respiration, and cuticle and eggshell formation. Mosquitoes possess 9 to 16 PPO members across different genera, a number that is more than that found in other dipteran insects. However, the reasons for the redundancy of these PPOs and whether they have distinct biochemical properties and physiological functions remain unclear. Phylogenetic analysis confirmed that Aedes aegypti PPO6 (Aea-PPO6) is an ortholog to PPOs in other insect species, classified as the classical insect type, while other Aea-PPOs are unique to Diptera, herein referred to as the dipteran type here. We characterized two Aea-PPO members, Aea-PPO6, the classical insect type, and Aea-PPO10, a dipteran type, which exhibit distinct substrate specificities. By resolving Aea-PPO6's crystal structure and creating a chimera protein (Aea-PPO6-cm) with Motif 1 ( 217 GDGPDSVVR 225 ) from Aea-PPO10, we identified the motif that determines PPO substrate specificity. In vivo, loss of Aea-PPO6 led to larval lethality, while Aea-PPO10 was involved in development, pigmentation, and immunity. Our results enhance the understanding of the functional diversification of mosquito PPOs.


  • Organizational Affiliation
    • Laboratory of Tropical Veterinary Medicine and Vector Biology, School of Life and Health Sciences, Hainan Province Key Laboratory of One Health, Collaborative Innovation Center of One Health, Hainan University, Haikou, Hainan 570228, China.

Macromolecule Content 

  • Total Structure Weight: 956.36 kDa 
  • Atom Count: 65,153 
  • Modeled Residue Count: 7,870 
  • Deposited Residue Count: 8,172 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
TK receptor
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
681Aedes aegyptiMutation(s): 0 
Gene Names: 5564622
EC: 1.14.18.1
UniProt
Find proteins for Q16G28 (Aedes aegypti)
Explore Q16G28 
Go to UniProtKB:  Q16G28
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16G28
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CU
(Subject of Investigation/LOI)

Query on CU



Download:Ideal Coordinates CCD File
AA [auth E]
BA [auth F]
CA [auth F]
EA [auth G]
FA [auth G]
AA [auth E],
BA [auth F],
CA [auth F],
EA [auth G],
FA [auth G],
GA [auth H],
HA [auth H],
JA [auth I],
KA [auth I],
LA [auth J],
M [auth A],
MA [auth J],
N [auth A],
NA [auth K],
OA [auth K],
PA [auth L],
QA [auth L],
R [auth B],
S [auth B],
T [auth C],
U [auth C],
V [auth D],
W [auth D],
Z [auth E]
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
EDO

Query on EDO



Download:Ideal Coordinates CCD File
DA [auth F]
IA [auth H]
O [auth A]
P [auth A]
Q [auth A]
DA [auth F],
IA [auth H],
O [auth A],
P [auth A],
Q [auth A],
X [auth D],
Y [auth D]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free:  0.310 (Depositor), 0.308 (DCC) 
  • R-Value Work:  0.269 (Depositor), 0.269 (DCC) 
  • R-Value Observed: 0.271 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 121.041α = 90
b = 364.149β = 118.95
c = 125.522γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MR-Rosettaphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31860702

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-29
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Structure summary
  • Version 1.2: 2025-04-02
    Changes: Database references