8JA3 | pdb_00008ja3

Structure of beta-arrestin1 in complex with C3aRpp


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8JA3

This is version 1.2 of the entry. See complete history

Literature

Molecular insights into atypical modes of beta-arrestin interaction with seven transmembrane receptors.

Maharana, J.Sano, F.K.Sarma, P.Yadav, M.K.Duan, L.Stepniewski, T.M.Chaturvedi, M.Ranjan, A.Singh, V.Saha, S.Mahajan, G.Chami, M.Shihoya, W.Selent, J.Chung, K.Y.Banerjee, R.Nureki, O.Shukla, A.K.

(2024) Science 383: 101-108

  • DOI: https://doi.org/10.1126/science.adj3347
  • Primary Citation Related Structures: 
    8GO9, 8J8R, 8J8V, 8J8Z, 8J97, 8J9K, 8JA3, 8JAF

  • PubMed Abstract: 

    β-arrestins (βarrs) are multifunctional proteins involved in signaling and regulation of seven transmembrane receptors (7TMRs), and their interaction is driven primarily by agonist-induced receptor activation and phosphorylation. Here, we present seven cryo-electron microscopy structures of βarrs either in the basal state, activated by the muscarinic receptor subtype 2 (M2R) through its third intracellular loop, or activated by the βarr-biased decoy D6 receptor (D6R). Combined with biochemical, cellular, and biophysical experiments, these structural snapshots allow the visualization of atypical engagement of βarrs with 7TMRs and also reveal a structural transition in the carboxyl terminus of βarr2 from a β strand to an α helix upon activation by D6R. Our study provides previously unanticipated molecular insights into the structural and functional diversity encoded in 7TMR-βarr complexes with direct implications for exploring novel therapeutic avenues.


  • Organizational Affiliation
    • Department of Biological Sciences, Indian Institute of Technology Kanpur, Kanpur, India.

Macromolecule Content 

  • Total Structure Weight: 181.01 kDa 
  • Atom Count: 7,130 
  • Modeled Residue Count: 1,053 
  • Deposited Residue Count: 1,638 
  • Unique protein chains: 4

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Beta-arrestin-1A [auth B],
E [auth A]
357Rattus norvegicusMutation(s): 0 
Gene Names: Arrb1
UniProt
Find proteins for P29066 (Rattus norvegicus)
Explore P29066 
Go to UniProtKB:  P29066
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP29066
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
C3a anaphylatoxin chemotactic receptorB [auth U],
F [auth V]
10Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q16581 (Homo sapiens)
Explore Q16581 
Go to UniProtKB:  Q16581
PHAROS:  Q16581
GTEx:  ENSG00000171860 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16581
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab30 heavy chainC [auth I],
G [auth H]
237Mus musculusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab30 light chainD [auth M],
H [auth L]
215Mus musculusMutation(s): 0 

Small Molecules

Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
B [auth U],
F [auth V]
L-PEPTIDE LINKINGC3 H8 N O6 PSER
TPO
Query on TPO
B [auth U],
F [auth V]
L-PEPTIDE LINKINGC4 H10 N O6 PTHR

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC4.0

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Science and Engineering Research Board (SERB)IndiaIPA/2020/000405
Department of Biotechnology (DBT, India)IndiaIA/S/20/1/504916
Science and Engineering Research Board (SERB)IndiaCRG/2022/002646
Science and Engineering Research Board (SERB)IndiaSPR/2020/000408

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-27
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Data collection, Structure summary