Additional feedforward mechanism of Parkin activation via binding of phospho-UBL and RING0 in trans
Lenka, D., Dahe, S., Antico, O., Sahoo, P., Prescott, A.R., Muqit, M.M.K., Kumar, A.(2024) Elife 
Experimental Data Snapshot
Starting Model: experimental
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(2024) Elife 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase parkin | A [auth C], B [auth A] | 327 | Homo sapiens | Mutation(s): 4  Gene Names: PRKN, PARK2 EC: 2.3.2.31 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60260 (Homo sapiens) Explore O60260  Go to UniProtKB:  O60260 | |||||
PHAROS:  O60260 GTEx:  ENSG00000185345  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60260 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin | C [auth B], D | 75 | Homo sapiens | Mutation(s): 0  Gene Names: UBA52, UBCEP2 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62987 (Homo sapiens) Explore P62987  Go to UniProtKB:  P62987 | |||||
PHAROS:  P62987 GTEx:  ENSG00000221983  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62987 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PEG (Subject of Investigation/LOI) Query on PEG | M [auth C], N [auth C], W [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | E [auth C] F [auth C] G [auth C] H [auth C] I [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | C [auth B], D | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Length ( Å ) | Angle ( ˚ ) |
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a = 45.45 | α = 90 |
b = 76.426 | β = 100.485 |
c = 114.329 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASES | phasing |
Funding Organization | Location | Grant Number |
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Department of Biotechnology (DBT, India) | India | Innovative Young Biotechnology Award (DBT/12/IYBAl2019/03) and Ramalingaswami Fellowship (DBT/RLF/Re-entry/42/2019) |